Osmerus eperlanus (European smelt): 134037657
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Entry
134037657 CDS
T10927
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
134037657 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oep03000
]
134037657 (irf5)
Transcription factors [BR:
oep03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
134037657 (irf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
134037657
NCBI-ProteinID:
XP_062339078
LinkDB
All DBs
Position
17:complement(4241349..4247659)
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AA seq
511 aa
AA seq
DB search
MSVQPRRIRLKPWLLAQVNSGRYPGLQWLSQDQRLFQIPWRHATRHMPMSEEENTIFKAW
ALETGKYQEGLDEPDPAKWKANLRCALNKSREFNLKYDGTKETPVQPYKIYEVCDQPGNG
DAIDDDDEEMPNINDLTITFPAHRDNSVRFNEPLYDRFGSAHPISMPLLQHPNPNGGLHM
KAEPAQVQLVGVGSMDHVAFAHQAGLSNGLGMAGGSIPPPTLSDLHPMPASGAPVAPGPT
LMDVQTGPMDVQAGPLAGMQSQAEEQPQPCKYDLLNSLPLTDLDLKFQYRGRTVGAQIVS
NPQGCRLYYGHLEPTPEQVELFGPVTLHQVRFPCSVDIQNQKQRFYTEHLLDVMDRGLIL
EIWEQDIYAVRLCQCKVYWSGPGVPELGPPNPMERERKIKVFSLNNFLQGLILFQKGEAP
SPPPFEICFCFGEDWPDKKPKEKKLIIVQVVPVVARMLTEMFSGELNWSTDSIRLQISNP
DVKDQTVEQFKELQRLLQSQHAQGPWANNAT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtccaacccaggcggatccgtctgaagccgtggctgttagcccaggtgaacagt
ggcaggtacccgggcctgcagtggctcagtcaggaccagcggctcttccagatcccctgg
agacatgccacacgacacatgcccatgtcagaggaggagaacaccatctttaaggcctgg
gctctggaaacagggaagtaccaggaggggctggatgagcctgaccctgccaagtggaaa
gccaacctgcgctgtgccctcaacaaaagcagagagttcaacctgaaatacgatggcacc
aaagaaacccccgtccagccatataagatctacgaggtttgcgaccagcctggcaacgga
gatgctatcgatgatgatgatgaagagatgccgaatattaacgaccttactataacattc
cctgctcacagggacaactcagtccgcttcaatgagccactctatgacagatttggttct
gcccaccccatctccatgccccttcttcagcaccctaatcccaacggaggccttcacatg
aaggcagaaccggctcaggttcagctggtaggggtgggcagtatggaccatgtggccttt
gcccaccaggcaggactctctaacgggctgggcatggctggagggagcataccacctccg
accctttcagacctgcatcccatgcccgcctctggagcccccgtagcaccagggccgacc
ctcatggacgtccagaccggccccatggacgtccaggccggccccttggcagggatgcag
agccaggcggaggagcaaccccagccctgcaaatacgaccttctgaacagcctgcctttg
actgatctagacttgaagtttcagtaccggggtcgtactgtgggcgcccagatcgtcagt
aacccccagggatgccggctgtactacggccacctggagcccacaccagagcaggtggag
ctgtttgggcccgtcaccctccaccaggtgcggttcccctgctcggtggacatccagaac
cagaagcagcggttctacacagagcatctgctggacgtgatggaccggggcctgatcctg
gagatctgggagcaggacatctacgctgtgcgtctgtgccagtgcaaggtgtactggtca
gggcccggcgtgcctgagctgggcccccccaaccccatggagcgggaacgcaagattaaa
gtgttcagcctcaacaactttctacaagggctcatcctgttccagaagggagaagctcca
agccctcctccgtttgagatctgcttctgtttcggtgaagactggcccgataagaagccc
aaggagaagaagcttatcatcgtccaggtggtgcccgtggtggcccggatgctgactgag
atgttctccggagaactcaactggtccacagacagcatccgcctgcagatctccaacccc
gacgtgaaggaccaaacagtggagcagttcaaggagctgcagaggctcctccagagccag
catgcccaggggccctgggccaacaacgcaacctga
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