Olea europaea var. sylvestris (wild olive): 111383991
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Entry
111383991 CDS
T05244
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
111383991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111383991
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111383991
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
111383991
NCBI-ProteinID:
XP_022863963
LinkDB
All DBs
Position
3:complement(6421280..6434748)
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AA seq
970 aa
AA seq
DB search
MGVPAFYRWLADRYPLCIVDVVEEEPREDKNGVSIRIDVTKPNPNGVEFDNLYLDMNGII
HPCFHPEGKPSPTTYDDVFISIFDYIDHLFSLVRPRKLLFMAIDGVAPRAKMNQQRTRRF
RAAKDATAAEAEEERLRQEFELEGANLLPKEKPETSDSNVITPGTEFMAVLSVALQYYVQ
CRLNRNPSWRFAKVILSDANVPGEGEHKIISYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQLEKCFLCGQAGHLAAECRGDQSHNANGKLLNDIPIHKKK
YQFLKIWVLREYLRYDMEIQNPPFNINFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMFVYRREFTAMGGYLTDAGEVFLDRVEHFAQAVSIYEDQIFQKRTRIQQAYENNEEM
KLKARGEHNVEPRASATDKVKLGEPGYKERYYSEKFGISESEKINEVRMEVVSKYVEGLC
WVSRYYYQGVCSWQWYYPYHYAPFASDLKGLSDLEIQFSPGEPFKPLDQLLGTLPSASSG
SLPQKYRGLMTDPLSPIYDFYPTDFEIDMNGKRAAWQGVAKLPFIDENKLLAETKKLEDT
LTEEEQFRNGVMFDLLYVHPLHPLAAQITLYYRLSHMEKSPWRIDMNASGGMNGFLWLTE
RNGLKRVVPSPINELEDIMDNQVLNITYLYPVPHAHIPEPPKGAVLPEKVVRPTDIKPFP
ILWHEDNGGRRMLGIERPQVSGAISGPTLGGAAYRLVHNTLNIKSIHTDYGISEQAASHN
FHGNHVANRLRPAGPPGYESGFSDGTSYHNSSYHPQNKPRPSGYDLGSGRNAEGRGYWDH
PNFLHGHFNPRGPVNGARYGVPSNNVQNRQNFKMQPSQEQYHDLRHSIYTLTMEDGAGTR
PHNSGQIPNIHQQLGQNVGPLPSPPPKWIGRHAGGNDGMYIDQQQTLTAAGNERQLKKVY
QVKNKSQQIN
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggctttttacaggtggcttgcagatcggtacccgctgtgtattgtggac
gtggtggaggaagagcccagggaggataaaaatggggtgtcaatacgtattgatgtaact
aagcctaaccctaatggcgtagagtttgataatttgtatttggatatgaatggtatcatt
cacccctgttttcacccagaaggcaagccttcacctaccacatatgatgatgtatttata
tcgatatttgattacattgaccaccttttctctttagttcgcccaagaaagctccttttt
atggcaatcgatggagtggctcctagagctaaaatgaaccaacaaaggactcgtcgtttc
agggctgcaaaagatgctacagcagctgaagctgaagaagaaagattgaggcaagagttt
gaacttgagggggcaaatttattgcctaaagagaagcccgaaacatccgattcaaatgtc
atcacccctggcacggaatttatggcagtgctttctgtggcccttcaatattatgtacag
tgtaggttgaaccgcaatccaagttggcgctttgcaaaggttatcctgtccgacgctaat
gttcctggtgagggagagcacaagattatatcctacattcgattacaacggaatcttcct
ggctttgatccaaataccaggcactgtttatatggtctggatgcagatctgatcatgtta
tctctagctacacatgaagtccatttctcaatattgagggaggtaatcactctgcccggc
cagctggaaaaatgttttctctgtggccaagctggtcatctggctgctgaatgtcgtggg
gatcaatctcacaatgcaaatgggaagttgttaaatgacattcccattcataagaagaag
tatcagtttctcaaaatctgggtgctgcgagaatacttgagatatgatatggagattcag
aaccctccattcaatattaactttgaaaggctggtggatgactttgtgtttttatgtttt
tttgttggcaatgattttcttcctcatatgcccaccttagaaattagagagggtgccatt
aatttgctcatgtttgtttatagaagggaattcacggctatgggtggttatcttactgat
gcgggtgaggtgttcctggatcgagttgagcactttgctcaagcagtttccatctatgaa
gatcaaatctttcaaaaacgaactcgaatacagcaggcatatgagaataatgaagagatg
aaacttaaagcaagaggagaacataatgtggagccacgggcttcagcaacagacaaggtg
aaactgggggagcctggttacaaagaaaggtattattcagagaaatttggtatatcagaa
tcagaaaagattaatgaagttagaatggaagtggtttcaaagtacgtggaaggattatgt
tgggtttcgcgctattattatcaaggtgtatgctcttggcaatggtactatccatatcat
tatgccccgtttgcatctgatcttaagggcctctctgatttagagatacagttttctcct
ggggagccgtttaaaccccttgatcagcttttaggaactttgccgtctgctagttctggt
tctctccctcaaaagtacaggggattgatgacggatcctttgtcgcctatttatgatttc
tacccaactgattttgaaattgacatgaatggaaagcgtgctgcatggcagggtgttgcc
aaattaccattcattgatgagaataaattgcttgctgagacgaagaagcttgaggacacc
ttgacggaggaagaacaatttcggaatggcgtgatgtttgatctactatatgtccatcct
cttcatcctttggctgctcaaattaccttgtactatcgtctttctcacatggagaaatcg
ccatggagaattgatatgaatgccagtggtggaatgaatggattcctttggttgactgag
cgaaatggtttgaaacgagtagttccttccccaatcaatgaattggaagacattatggat
aatcaagttctaaacattacttatctttatccagttccacatgcacacatcccggaacct
cctaaaggtgcagtcctacctgaaaaggttgtgagacctactgacataaaaccattccct
atactatggcatgaagacaatggtggcaggcgtatgctaggcatagaaaggccacaagta
tccggggcaatatctggtcctacattgggaggagctgcttatcgtctggttcataacaca
ctgaacattaaatccattcacactgactacggaatttcagagcaggcggcttctcacaat
ttccatggcaaccatgtagcgaacagattgaggccagctggaccgcctggctatgaaagt
ggcttttccgatggaacatcttatcataattcttcataccacccacaaaataagcctaga
ccatctgggtatgacctaggatctggtcgaaatgcggaaggacgaggttattgggatcat
ccaaattttctacacgggcatttcaatcctcgaggaccagttaatggtgctagatatggt
gtcccctcgaacaacgtgcaaaacaggcaaaacttcaagatgcaaccaagtcaggaacag
tatcatgacttaagacatagcatctatactttgaccatggaagatggtgccggaaccagg
ccacacaattcaggtcaaataccaaacatacatcagcaacttgggcaaaacgtgggtcca
cttccgtcaccacctcctaaatggattggcagacatgctggaggaaatgatgggatgtat
attgaccaacaacagactttaactgctgctggaaacgagagacaattgaagaaggtttac
caggtcaaaaacaagtcacaacaaataaattga
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