Oryza glaberrima (African rice): 127765066
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Entry
127765066 CDS
T08853
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127765066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127765066
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127765066
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
Arf
AAA_29
nSTAND3
AAA
ORC-CDC6-like
AAA_23
AAA_15
Motif
Other DBs
NCBI-GeneID:
127765066
NCBI-ProteinID:
XP_052145825
UniProt:
I1PAQ9
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All DBs
Position
3:10847316..10850541
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AA seq
320 aa
AA seq
DB search
MAPTVEISHLSFTYPGIDGRPPPGAPPLIEDVCFSLDAGHRCLLLGSNGAGKTTILKILG
GKHMVDPSMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGYQVNIQMDISAEKMIF
GVVGVDPQRRDELIKILDIDLAWRMHKASDGQRRRVQICMGLLKPFKVLLLDEITVDLDV
LARANLLTYLKKECEERGATIIYATHIFDGLDDWPTHIVYIARGKLQLALPLEKVKEMSQ
LSLMRTVESWLRKERDEDRRRRKERKEKGLPEFDKVTEGSRVIGDPAARAVNNGWAAGRL
ASTVAGEENFIFSSNSVLRQ
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaacggtggagatcagccacctctccttcacctacccgggcatcgacggccgc
ccgccgcccggcgcgccgccgctcatcgaggacgtctgcttctccctcgacgccggccac
cgctgcctcctcctcggctccaacggcgccggcaagacgacgatactgaagatactgggc
gggaagcacatggtggatccgagcatggtgcgggtcctgggcaggtcggccttccacgac
acggcgctcacatcatctggcgacctctgctacctaggcggtgagtggaggcgcgatgtt
gcctttgcgggctaccaggtaaatatacagatggacatttcagcagagaagatgatattt
ggtgttgtgggcgttgatcctcaaaggagagatgagcttatcaagattttggatattgac
cttgcctggcgcatgcacaaggcatccgatggtcaaaggagacgggtccaaatttgcatg
gggcttctcaagccattcaaagttcttcttcttgatgagatcacagtagatctggatgtg
ttggcaagagcaaatctattgacatatttaaagaaggaatgcgaggaacggggtgctaca
atcatctacgcaacacatatttttgacggacttgatgattggccaacacacattgtgtac
attgcccgtgggaagttgcaactagcactgcctttagaaaaggtgaaagaaatgagccag
ttatctctcatgagaacagtggagagctggctgaggaaagagagagacgaggataggcgg
agaagaaaggaacggaaggagaaaggcctcccagagtttgacaaggttactgaggggagt
cgggttataggtgatcccgctgccagagcggtgaacaatgggtgggcagcagggaggctc
gcctcaacggttgctggtgaagagaatttcattttcagctctaacagcgttcttaggcaa
taa
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