Oryza glaberrima (African rice): 127776717
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Entry
127776717 CDS
T08853
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127776717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogl03041
]
127776717
Spliceosome [BR:
ogl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127776717
Complex C
U5 SnRNP specific factors
127776717
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
EF-G_D2
Septin
Motif
Other DBs
NCBI-GeneID:
127776717
NCBI-ProteinID:
XP_052159201
UniProt:
I1Q3J1
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All DBs
Position
6:complement(23008926..23014956)
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AA seq
997 aa
AA seq
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MDDSLYDEFGNYIGPELADSDADDSDADASPSPSPSRSPSPSARSPSGSPSRPAALMDVD
GGDDDDDADPSQSAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQPLEQPIVAPPRVVRF
EVGTRAEATSTYATTDFLLGLAANPALVRNVALVGHLQHGKTVFMDMLVEQTHEVDTFDS
EGERHVRFTDTRVDEQERRVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAAL
RIADGAVLVVDAAEGVMVNTERAIRHATQERLPIVVVINKVDRLITELKLPPNDAYFKLR
HTLEAINDLISSCSTTVGGTQLVDPAAGNVCFASGSAGWSFTLQSFAHLYLKIHGIQFDH
EKFASRLWGDLYYHPDTRTFKKKPPKEGANRSFVEFVLEPLYKIYSQVVGESKGKVEATL
SELGVTLSNAAYKLNVRPLLRLACRSIFGTSTGFTDMLVKHIPSVKDAAPRKIEHIYTGP
QDSTIVDAMKKCDPHAPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSP
DDEEDMTVKEVTKLWVYQARYRVPISKAPAGSWVLIEGVDASIMKTATICPMKMDEDVYI
FRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAVTKVEESGEHTILGTGELY
LDSIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGL
AEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPEKQGPNILLDDTLSVEVDK
NLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVV
YSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLP
VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVK
TRRRKGMSEDVSINKFFDEAMMNELAQQAADLHLQMM
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggcaactacatcggcccggagctcgccgactcc
gacgccgatgactccgacgcggacgcctccccgtccccctccccgtcccgctccccttcc
ccctccgcgcgctccccgtcgggctccccctcccgccccgccgctctcatggacgtcgac
ggcggcgacgacgacgacgacgccgacccgtcccagagcgccgtcgtcctcgccgaggac
aagaagtactaccccaccgccgaggaggtgtacgggcccggcgtggaggcgctcgtcatg
gacgaggatgagcagccgctagagcagcccatcgtcgcgcccccacgcgtcgtgaggttc
gaggtcggcacccgcgcggaggccacctccacctacgccaccaccgacttcctcctcggc
ctcgccgccaacccggcgctggtgcgcaacgtcgcgctcgtgggccacctgcagcacggg
aagacggtgttcatggacatgctcgtggagcagacccacgaggtggacaccttcgactcc
gagggcgagcgccatgtgaggttcaccgacacccgggtggatgagcaggagcggcgggtg
tccatcaaggccgtgcccatgtcccttgtgcttgagggagggaatggcaagtcatacctg
tgcaatatcatggacacacctgggcatgtcaatttttccgatgagatgactgccgcgttg
cggatcgctgatggggctgtgcttgttgtcgatgctgccgagggtgttatggtaaataca
gagagggcgattcgtcacgcaacacaagaaagactccccattgttgtcgtgattaacaag
gttgatagattgattacagagctaaagctgccacctaatgatgcatatttcaagctacgg
catacactggaggcgatcaatgatctcatctcgtcttgttctaccacagtaggtggcact
caactggttgatcctgctgctggaaatgtttgttttgcaagtggttctgcaggctggtct
tttaccttgcaatcttttgctcatctttatttaaagatccatgggattcaatttgatcat
gagaaatttgcatcgcgtctatggggagacctatattatcaccctgacactagaaccttc
aaaaagaagcctccaaaggaaggagctaatagatcatttgttgagtttgtccttgaacct
ttgtacaaaatatatagtcaggttgttggggagtcaaagggtaaggttgaagcaactctt
tctgagctgggtgtgacgctgagcaatgcagcttataagcttaatgttaggcctttgctg
agattagcttgtcgctcaatttttgggacttctactggctttactgacatgctagtgaaa
cacataccctctgtcaaggatgctgctccaaggaagatagaacacatatacactggtcca
caagattccactattgtggatgctatgaaaaaatgtgatccacatgcgccccttatggtt
aatgttacaaagttgtatcctaagtctgactgtagtgtctttgatgcctttggacgagtt
tatagtggcacaatacagactgggcaaactgtgcgtgttcttggagaaggctattctcct
gatgatgaagaagatatgactgtgaaagaggttactaagttgtgggtgtatcaggcacgg
taccgtgttccaattagtaaagcccctgctggttcttgggttcttattgaaggtgtagat
gcatcaattatgaaaactgcaactatatgtcctatgaagatggatgaagatgtctacata
tttagacctctacgtttcaatactctacctgtcgtgaaaatagcagctgagcctctaaac
ccaagtgagctccctaagatggtggaaggtcttcgtaaaatcagtaagagttatcctctt
gctgttactaaggtggaagagtctggagaacacactatccttgggactggtgagctttat
ctagattctataatgaaggacctcagagagctttactctgaggtagaagtgaaggttgca
gatccagtcgtgacattttgtgaaacagttgttgatacttcttcgatgaaatgctttgct
gaaacacccaacaagaggaacaaaattaccatggttgctgaaccattggaaaagggcttg
gctgaagatattgagaacggccttgttagcctggactcaaggcaaaaggaaatcactgac
ttctttcgtcaacgctaccagtgggatgtgctagcagcaaggtcaatatgggcttttggg
cctgaaaagcagggtcctaacattctcttagatgacaccctttcagtcgaggtggacaaa
aacttgctcaatgcagtcaaagattcaattgttcaagggtttcaatggggtgctagagaa
ggtccgctgtgtgatgaaccaattagaaatgtgaaattcaagatcttaaatgcaaacata
gctcctgaaccgttgcaccgtggtggtggtcagataattccaacagctcgtcgtgtggtt
tactcagcgttcctaatggctaatccacgccttatggagcctgtatattatattgagatc
caaacaccaattgactgtgtctctgccatatatacggtgctatcccgtcgtcgagggcat
gtaacagcggatgtacccaaaccaggaactccaatctatgttgttaaggcatttttacct
gttatagagtcatttggatttgagaccgacctgaggtaccatacacagggacaggccttt
tgcctatcagtgttcgatcactgggctattgttcctggtgatcctttagacaagaatatt
gtcctccggcctctggaaccagcaccaatacagcatcttgctcgtgagtttatggtgaag
actaggcgaaggaagggcatgagtgaggatgtgagcatcaacaagttctttgatgaggcc
atgatgaacgagctggcgcagcaggctgctgatctccatcttcaaatgatgtag
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