Oryza glaberrima (African rice): 127777410
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Entry
127777410 CDS
T08853
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl04075
Plant hormone signal transduction
ogl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
127777410
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
127777410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogl03000
]
127777410
Transcription factors [BR:
ogl03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
127777410
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
Motif
Other DBs
NCBI-GeneID:
127777410
NCBI-ProteinID:
XP_052159960
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All DBs
Position
1:complement(9460612..9464340)
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AA seq
648 aa
AA seq
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MSDGNDFAELLWENGQAVVHGRKKHPQPAFPPFGFFGGTGGGGGGSSSRAQERQPGGIDA
FAKVGGGFGALGMAPAVHDFASGFGATTQDNGDDDTVPWIHYPIIDDEDAAAPAALAAAD
YGSDFFSELQAAAAAAAAAAPPTDLASLPASNHNGATNNRNAPVATTTTREPSKESHGGL
SVPTTRAEPQPQPQLAAAKLPRSSGSGGGEGVMNFSLFSRPAVLARATLESAQRTQGTDN
KASNVTASNRVESTVVQTASGPRSAPAFADQRAAAWPPQPKEMPFASTAAAPMAPAVNLH
HEMGRDRAGRTMPVHKTEARKAPEATGATSSVCSGNGAGSDELWRQQKRKCQAQAECSAS
QDDDLDDEPGVLRKSGTRSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKACYV
LQIDKASMLDEAIEYLKTLQLQVQLSLTQMMSMGTGLCIPPMLLPTAMQHLQIPPMAHFP
HLGMGLGYGMGVFDMSNTGALQMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQ
TIPSSASSVPPFASLAGLPVRPSGVPQVSGAMANMVQDQQQGIANQQQQCLNKEAIQGAN
PGDSQMQIIMQGDNENFRIPSSAQTKSSQFSDGTGKGTNARERDGAET
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacggcaacgacttcgccgagctgctgtgggagaacggccaggcggtggtgcac
gggaggaagaagcacccgcagccggccttcccgccgttcggcttcttcggtggcaccggc
ggtggcggcggcggcagcagtagtagagcccaggagaggcagcccggcggcatcgatgcg
ttcgccaaggtggggggcggcttcggcgccttgggcatggctccggcggtgcacgacttc
gcttctggcttcggcgccaccacgcaggacaacggtgatgatgacaccgttccgtggatc
cattaccccataattgacgatgaagacgccgccgcccctgctgctctcgcagcagcggac
tatggctccgacttcttctccgagctccaggcggcggcggctgccgcggcggccgccgcg
ccgccgaccgatctcgcctctctgccagcctccaatcacaacggcgccaccaataacaga
aatgctccggttgccaccaccaccaccagggaaccctccaaggaaagccacggcggcctg
tcggttcccaccacccgagccgagccgcagccgcagccacagctcgccgcagccaagctg
cctcggtcgagcggcagcggcggcggcgagggcgtgatgaacttctcgctcttctcccgc
ccggccgtcctggcgagggcgacgctggagagcgcgcagaggacgcagggcaccgacaat
aaggcgtccaatgtcaccgcgagcaaccgcgtcgagtcgacggtcgtgcagacggcgagc
gggccaaggagcgcaccggcgttcgccgatcagagggcggcggcgtggccgccgcagccg
aaggagatgccgttcgcgtccacggcagccgctcccatggccccggccgttaacctgcac
cacgagatgggccgtgacagggcaggccgaaccatgcctgtccacaaaaccgaggcgagg
aaggcacctgaggccacgggcgcgacatcgtcggtgtgctccggcaacggagctgggagt
gacgagctgtggcgccagcagaagcggaagtgccaggcccaggcagagtgctcagctagc
caagacgatgatcttgacgatgaacctggagtattgagaaaatctggaaccaggagcacg
aaacgcagccgcacagctgaggttcacaatttatcagaaaggaggagaagggacaggatc
aatgaaaagatgcgcgctctgcaagaactcattcccaactgcaacaaggcatgctatgtt
ttgcagattgataaagcctcgatgctggatgaagctatagagtacctcaaaacccttcag
cttcaagtacagttgtcattgacacagatgatgtccatgggaactgggctgtgcattcct
ccaatgctattaccaacagccatgcagcacttgcaaattccaccgatggctcatttccct
catctcggcatgggattggggtacgggatgggcgtcttcgacatgagcaacactggagca
cttcagatgccacccatgcctggtgctcactttccctgcccaatgatcccaggtgcgtca
ccacaaggtcttgggatccctggcacaagcaccatgccaatgtttggggttcctgggcaa
acaattccttcgtcagcgtctagtgtaccaccatttgcatctttggctggtcttcctgtt
aggccaagcggggtccctcaagtatcaggcgccatggctaacatggtgcaagaccagcaa
caaggcatagcgaatcaacagcagcaatgtctgaacaaggaagctatacagggagcaaat
ccaggtgattcacaaatgcagatcatcatgcagggtgacaacgagaattttaggataccc
tcttcagcccaaacaaaaagcagtcaattttcagatggtaccggaaaggggaccaacgct
agagagagagatggggctgaaacataa
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