Oncorhynchus gorbuscha (pink salmon): 123998650
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Entry
123998650 CDS
T07892
Name
(RefSeq) low-density lipoprotein receptor-like isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03272
Virion - Hepatitis viruses
ogo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
123998650
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
123998650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
123998650
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
123998650
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
123998650
NCBI-ProteinID:
XP_046159672
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All DBs
Position
LG16:complement(17436309..17447774)
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AA seq
880 aa
AA seq
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MGRLLCVLLVFLACCVVQTNAETICGTRQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CLARTCGTTEFSCGGHLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNKFRCSNSQCV
SASFVCDEELDCDDGSDEASCPTTTCSSTSFQCNNSVCVPRLWACDGDADCSDGSDEWPQ
NCGTRDPGGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEMGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKIGYECQCPTGYYLTDKKHCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PHLKNAVALDMDMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFRNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDDIVWPNGITLDLLNQRLYWVDSKLHTLSSINVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPAAPVKPIV
PASNPPPAPVRTSTAPPARTTTKAPIITTTVTPAPPRTTKPVPRNPQPAQPDRPRIPQAQ
TTTVPQVTTQDIRHEFAAIPTVPSNPAALYIGLPIAIVCLVAFGAMLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgctgtgcgtgctgttggtgttcctggcttgctgtgttgtccaaacaaac
gcagagacaatatgcgggaccaggcagttcctgtgtgggaacgggaagtgtattacgctg
agatgggtgtgtgatgacacagatgattgtggagatggaactgacgagctccccggaacc
tgcttggccagaacatgcggaaccacagagttcagctgtggtggacatctgaaccagtgt
gttcccagtacatggctctgtgatggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccgctgcagtaacagccagtgtgtg
tcggcctcttttgtgtgtgatgaggagttggactgtgatgatgggagcgacgaggcttcc
tgcccaaccaccacctgtagctccacctccttccagtgcaacaactctgtgtgtgtgccg
cgcctgtgggcctgcgacggagacgctgactgctcggatggctctgacgagtggccccag
aactgtgggacgcgagaccctgggggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagtcgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggtcgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgtagg
gactggtcagatgagcctctcagggagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagatcggctatgagtgccaatgccccaccggc
tactacctgacggacaagaaacactgtgaagatatcgatgagtgtgccaacccagatatc
tgtagccagatctgtgtcaatcatatgggcagctacaagtgtgagtgtgaggagggctac
caggttgacccagccactaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccacctgaagaatgcagtggctctggacatggacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
caacacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctccgtgtcaaccgcc
aacgggagccgtcgcaagactctcttccggaatgacctggccaagccccgcgctattgtg
gtcgacccccacagcaacttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacgacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcaacgtacagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctgggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcagctccagtcaagcccattgtt
cccgcctccaaccccccaccggcacccgtccgcacctccactgcacctccagcccgcacc
accactaaggcccccatcatcactacaacagttacgcctgcgcctccccgcactaccaag
cctgtgccacgcaacccccagcctgcccagccagatagacccaggatcccccaggctcag
actaccacagtgcctcaagtcaccactcaggacatccgccatgaatttgctgctataccc
acagtcccttcaaaccctgcagctttatacatcgggctgcctatagccattgtgtgtctg
gtggcctttggtgccatgctgctgtggaggaactacaggctgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagacggctactcctacccaccgagacagattgtgagtcttgatgatgaggct
tga
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