KEGG   Oncorhynchus gorbuscha (pink salmon): 124000176
Entry
124000176         CDS       T07892                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    124000176
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ogo03000]
    124000176
   04121 Ubiquitin system [BR:ogo04121]
    124000176
   03036 Chromosome and associated proteins [BR:ogo03036]
    124000176
Enzymes [BR:ogo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     124000176
Transcription factors [BR:ogo03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    124000176
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     124000176
Chromosome and associated proteins [BR:ogo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    124000176
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     124000176
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box DUF7885 JmjC Cupin_8 LRR_4 LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 124000176
NCBI-ProteinID: XP_046162326
LinkDB
Position
LG16:complement(75416518..75462652)
AA seq 1388 aa
MEAGADSGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSNSYNRHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGLRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFARYYETPEEERDKLFNVISLEFSHTKLENLVKRPTVVDLVDWVDNMWPLKLKQRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDVFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYNEMCWYVLERYVHCLTKRSHLAPEFHRDPLLI
DLETKLSTESPSSDSRSQDMDEEDSCEAQQERDERSDRSAFDDPCSPDNRKGKPSAPQPL
KAAFDDSCNPTSIQPPEFPKTPSGSPGSESQSKWTHLTEFELKGLKALVEKLEALPENKK
CVPDGMEDPQALLDDMKVVLKEHEDDDPKMAATGVPVVCWPKKSSKQQRPPNRPKPKMAA
SSPAPAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIM
RQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNLMLMECSICNEIVHPLCLKVKNSGGV
VNEELPNCWECPKCNHAGKTGKAVKQKRGPGFKYASNLPGSLLKDSRLNRDVKEESDLPS
VPTSPTAVKRKAERDDTPKRKAEEYPPLKKRSPMLSLGGLPHPRPRPEDNPLRKKRKLFD
IKDEDEPPVVKKKKKPPKPDDTFTSKLLRPIKQEKVDEDEDHEDDRYPGDRVAAKGKREE
EEDKEDDEEEEEEKDGVEDSKDGKVKTMLSPLLRTSAARESDQSCSSSPRAGPSSEGGDA
PDKTLGQLKAHQRRRLPNKELSKELSKELNLEIQKTEDCLANQNRRPLKGENSPTNNNRR
PLKTEDSSINQNRRPLKTEDSPTNHNRRPIKTEDGLSNHNRRPLKTEDCLSNQNHRPMKT
EPESDGEEPKPKRPLDNGSSDLGDWLHPRGREVNGTPRQLSPLGWNRSPPITPICPRPPP
CHSPPKCVQMERHVIRPPPISPPPDRLPLDDGQAHVMRREVWMVVFSHLAHRDLCVCMRV
CKTWNRWCCDKRLWTQIDLNRCKSITPLMLSGLIRRQPVALDLSWTNISKKQLSWLINRL
PGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDN
RSKLRNVVDLRLAGLDITDTSLRLLIRYMPQLTRLDLSYCNHVTDQSVNILTAAGTTTRD
SLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCEQFIAEMSVSVQFELVE
EKLLLKLS
NT seq 4167 nt   +upstreamnt  +downstreamnt
atggaagctggtgcagattctggacgcaagctgcgctccatctgccggacaatgtacgac
gaaaatgaggacttctctgacgttgaagaaattgcaaatgtcaggggttttaatctggag
gagaaacttgttagcaattcgtacaacagacatttcgttcagttgatggacggcaaagat
ttcacttatgagtatgttcaaagagaagcacttcagacccctcttattttcaaagccaaa
gatggactggggctcagaatgccagacccggagttcactgtcagtgagattaagggtttg
gttggtagccgtcgtgccgttgatgtgatggacgtgagcactcagaaaggctctgagatg
agcatggcccagtttgcccgctactatgagacgcctgaggaggagcgggacaaactcttt
aatgttatcagcctggagttcagccacaccaaactggagaacctcgtcaagaggcccact
gtggtggatctagtggactgggtggacaacatgtggccccttaaactgaaacaaagacaa
actgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgtgttcaagggaggaaaggtgttctggctggtgcctccgacacctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacgtcttcctgggagatcgt
gcagatggctgccagagagttgagctaaaacagggctacaccttcttcatcccctccggc
tggattcatgcagtctacacccccgaggacacactggtgttcggaggcaacattctgcac
agctttaacattcccatgcaactctcaatctatgagatagagaacaggactaaggttcat
tccaagttccgctacccgttctacaatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcccatctcgctccggagtttcacagagatcctctgctaatc
gatttggagacgaagttgagcactgagagcccctcctctgactcgcggagtcaggacatg
gacgaggaggactcctgcgaggcgcagcaggaacgagatgaacggagtgacaggtcagca
tttgatgacccctgctctcctgataacaggaagggtaaacccagcgcccctcagcctctt
aaagctgcctttgatgatagctgcaaccccacctccatccagcctccagagttccccaaa
accccctctggttcgccaggctcagagtctcagagtaaatggactcatttgactgagttt
gaactgaagggccttaaggccctggtggagaagctggaagcactccccgaaaataagaaa
tgtgtcccagatggtatggaggacccccaggccctgctggatgacatgaaggttgtcttg
aaggaacatgaagacgatgatcccaaaatggctgccactggtgtacctgtggtgtgctgg
cctaagaagtcttccaagcagcagagacctcccaacaggcccaaacccaaaatggcggcc
tcgtctcctgcgcctgcggtcaagctgtcggccagccggagcacgtctggggcccggaga
aggaggacgcgatgtcggaagtgtgaggcgtgcctgaggacagagtgtggagaatgccac
ttctgtaaagacatgaagaagtttggagggccgggtcgcatgaaacagtcctgcatcatg
aggcagtgtatcgcgcctgtcctaccccacactgcggtgtgtctggtgtgtggggaggca
gggaaggaggacacggtggaggaagaagaggacaaatttaacctcatgctcatggagtgc
tccatctgcaatgagatagtccatcccctctgcctaaaggtgaagaattctggtggagtt
gtaaatgaagagttgccaaactgctgggagtgtccaaaatgcaaccatgcagggaaaacc
gggaaagctgtcaagcaaaaaagaggaccaggattcaagtacgcgtccaaccttcccggg
tcgctgctgaaggactcgcgattgaaccgtgacgttaaggaagagtccgacctgcccagt
gtgccaacatcacccactgcagtgaagaggaaggcagagcgtgatgacacccccaagagg
aaagcagaggaatatcctcctctgaagaaacgttctcccatgttgtctctgggcgggcta
cctcatccccgacccaggcctgaggacaaccctctgaggaagaagaggaagctgttcgac
atcaaagatgaggacgaacctcctgttgtcaagaaaaagaagaagcccccaaaacctgat
gacaccttcacctccaagctcttacggcccatcaagcaagagaaagttgatgaggacgaa
gaccatgaagatgacagatacccaggggacagggttgcagctaaagggaaaagagaagag
gaggaagataaggaggatgatgaggaggaagaagaggagaaagatggtgtagaggacagt
aaagatggtaaagtaaagactatgctgagtccactgctacggacgtctgcagccagagag
agtgaccagtcctgctccagctctccccgggcagggcccagcagtgaggggggcgatgcc
ccagacaagacacttggccagctgaaggcacaccagcgacgccgcctacccaacaaagag
ctgagcaaggagctgagcaaagagctcaacctggagatccagaagaccgaggactgcttg
gccaatcagaaccgcagaccactgaagggggagaacagcccaaccaataacaaccgtcga
ccactgaagactgaggactcctctatcaatcagaaccgcagaccactaaaaacagaggac
tcccccaccaatcataaccgcaggccaattaagacagaggatggcctatccaatcacaac
cgtcgaccattgaagacagaggactgcttgtccaatcagaaccacaggccaatgaagaca
gagcctgagagtgacggggaggagcctaagcctaaacggccactcgacaacggcagcagt
gacctcggagactggctccaccccagggggcgggaggtgaatgggacgccccgccagctc
tcgcccctggggtggaaccgcagccctccgatcacacctatttgcccgcgcccccctccc
tgccactcaccgcccaagtgtgtacagatggagcgtcacgtgatccggccgcctcccatc
agccccccaccagacagacttccactggatgacggacaggcccacgtgatgcgcagggag
gtgtggatggtcgtgttcagccacctcgcacacagagacctgtgtgtctgcatgcgtgtc
tgcaagacctggaacagatggtgctgtgataagaggctgtggacgcagatcgatctgaac
cgctgtaagtccatcactcccctcatgctgagtggcctcatccgcagacagcctgtggct
ctggacctcagctggaccaacatctccaagaagcagctcagctggctcatcaacagactg
ccaggtctgcggatgctgctgctctcaggctgctcctgggtggctgtgtctgccctctgc
accgccagctgcccgctgctgaggaccctggacgtccagtgggtagagggtctcaaagac
gcccagatgagggatctgctctcaccccccacagacaacagaccaggtcagctggacaac
aggagtaagctgcgaaatgtggtggacctgcgtctggccgggctggacatcacggacacc
tctctgcgcctcctcatccgctacatgccccagctgaccagactggacctgagctactgc
aaccacgtcactgaccagtcagtcaacatcctgaccgctgcagggaccaccaccagagac
tcgctcactgacatcaacctctccgtgtgcaacagagtcacggaccagtccctgacttac
ttcaagcgctgtggaagcatctgtcatattgacttgcgatactgcaagcaggtgaccaaa
gagggctgcgagcaattcattgctgagatgtcagtgagtgtacagtttgaactagtagag
gagaaactactgctgaaactcagctag

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