Oncorhynchus gorbuscha (pink salmon): 124008630
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Entry
124008630 CDS
T07892
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124008630 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124008630 (lig4)
Enzymes [BR:
ogo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124008630 (lig4)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124008630 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
C8-3_MUC4
DUF4607
Motif
Other DBs
NCBI-GeneID:
124008630
NCBI-ProteinID:
XP_046176050
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All DBs
Position
LG21:40856786..40861144
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AA seq
914 aa
AA seq
DB search
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERVAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPFMS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTTDTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVFIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKRKSPAAAKPKKAVGIIDHFKSQDLSGV
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDVVWAPWLLECLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRVDTLTAQCIAKLEERFSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPAT
CLDTRALEFRFYGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactccttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtgtggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagacttcgctcttatgacctactttgtgttaaag
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tacaacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctttatgtcc
ctcagcgaagtgtccattggcctcttctttgccttcaaacctatgctggccgccgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccatgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactaccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactctgagctgcagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtaaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgtcgcggtggccgaagctccgaagcctgga
gagaaaccctccgttttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggttgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggacggagagaccggaagtcttcattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgaaatgtacaaaaccaactgc
acgctacgcttccccaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgagcctgaaaagaagaagcgcaagtcgccggcagcggcc
aagcccaagaaagctgtcggcatcatcgaccacttcaagtcccaggacctatctggcgtt
accaaggagacggacatgttcgaggacgtggagttttgcgttatgaatggcaatgaggct
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggacacttactgtgtgatcgccgctgtggagaacatgcgcgtgaagaacctg
atctcttcagaccagcacgacgtagtgtgggctccctggctgctggagtgcctagacagg
aagcaggtggtgccatggcaaccgcgtcacatgatacacatttcaccctccaccaaggag
cactttgccaaggaatacgactgctacggagacagctactttgtggacacagacgagcag
cagctgagggaagtctttggtcggattggtagagtggacactttgacggcacagtgcatc
gctaagttggaggaacgcttcagctgggacgacctccccactagcatgttcagacctttc
agggtctacatggacagatacgcagacataggagaccctaaaagcatcgtaccggcaact
tgtctggacacgcgggctctggaattccgcttctacggagggacagtagtgcagaagctt
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagaatct
atcaaagcagggtttttgcggaatgacaatgactacctagtgtaa
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