Oncorhynchus gorbuscha (pink salmon): 124011140
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Entry
124011140 CDS
T07892
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04010
MAPK signaling pathway
ogo04020
Calcium signaling pathway
ogo04510
Focal adhesion
ogo04540
Gap junction
ogo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124011140
04020 Calcium signaling pathway
124011140
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124011140
04540 Gap junction
124011140
09142 Cell motility
04810 Regulation of actin cytoskeleton
124011140
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ogo01001
]
124011140
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ogo04090
]
124011140
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
124011140
Protein kinases [BR:
ogo01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
124011140
CD molecules [BR:
ogo04090
]
Proteins
124011140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
VEGFR-1-like_Ig-like
Psg1
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
124011140
NCBI-ProteinID:
XP_046180161
LinkDB
All DBs
Position
LG23:complement(29178459..29237997)
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AA seq
1098 aa
AA seq
DB search
MRSVRVSTLHLTALLTALLHFCPEYRCLEISPSNSEVVMTPGDSIIFTCSSWGTVGWRFK
RNDDIPYFGVENQNTTSVLILDNVTWRHTGVYVCAEALTDEAREVAVFVPDPEVWFIESS
HGMVTKTSEEGTIPCVVTNPQINVTLYETDSNMHLKGVYIPSEGYRASLEDRTYVCRGEL
KGEEKESQEFYVLSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDFIEPLTDILSSQSMRSCLTVSKATLANTGQYVCHVHESVQDQRATANVNITVLERGFV
ELRSVQERNVSAQLHQNVELTVEIESYPAPRVRWTKDNATVNGDNTVITRQEHETRYISI
LTLVRIRTEQKGLYTVLVANGDDTKEVTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPSIQFFSCDSMLKISPRCSNRSTVWQPLVSDPETLSIQTNISFNESRKVGQVRSQVT
FHKPQQVTVRCEASNEGGVSRRDVKLVSSTLFSQVAVLAAVLPLVVILITSIIILIAVWR
KKPRYEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMARDSLVLGRTLGSGAFGRVVEA
TAYGLGHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPL
YLVTEYCRYGDLVDYLHRNKHTFLQYYAEKNQEDSGCRVSGGSTPLSQRKGYVSFGSESD
GGYMDMSKDEPTVYVPMQELKDTIKYTDIQPSPYESPYQHHLYQEQDQTTVDSALVISDC
PTLSYSDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDS
NYVSKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGAPYPDLPMNELFYS
ALKRGYRMAKPNHATDEVYEVMQKCWDEKYERRPEFSFLVHTMGNMLTDSYKKRYCQVND
EFFKRDHPAVVRTKPRLSSHFPTPALTPSTAPATPQDTNPYPLTGDFRSEADGEEASYND
YIIPIPDPKPEEEVCSEANDMPTKSLASSRALEDEEADSISQETVEADTIPEEKYLHANQ
ALIPLESSGTPEAEDSFL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtgtccactctccatctgacagccctactaacagctcttttgcac
ttctgccctgagtaccgttgcttggagatctcccctagcaacagcgaggtcgtcatgaca
ccgggcgactccataatcttcacctgttctagctgggggacagtcggatggaggttcaag
cggaatgacgacattccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaacgtgacgtggagacacacaggagtgtacgtctgtgccgaggctttgacggac
gaggctagagaggtggcagtctttgtgccggaccctgaagtgtggttcattgagagctcc
cacggcatggtgaccaagaccagcgaggaggggaccatcccctgtgtggtcaccaacccc
cagatcaacgtcaccctctacgagacggacagtaacatgcacctaaaaggggtctacatc
cccagtgagggctatagggcatccctggaggacaggacctatgtgtgtcgtggggagctg
aaaggagaggagaaagagtcccaggaattctacgtcttaagtattgttgtcccggagaca
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcccctgacagtg
aactgcacggtgcatggagtggagctggtcttcttctcctgggactaccccaacagagac
gtggacttcatcgagccattgacagacatcctgtcgtcccagagcatgcgctcctgcctc
accgtctctaaggcgacgctggccaacacagggcagtacgtgtgtcacgttcacgagagt
gtccaggaccagagggccaccgccaacgtcaacatcaccgtcctcgagcgaggcttcgtg
gagctgaggtctgtccaggagcgtaacgtctcggcccagctgcaccagaatgtagagctg
acggttgagatcgagtcctaccctgctccacgtgtccgctggaccaaagacaacgccacc
gtcaacggagacaacaccgtcatcaccaggcaggagcacgagaccaggtacatcagcata
ttgaccttggtgaggatcaggacggaacagaagggactttacactgttctcgtcgccaac
ggagatgacaccaaggaagtgacatttgatctcgaggtcaaagttccccctcagataaca
gacctgtcggaccaccatctcccagggaagaggcatgcagtgacctgtgtggccgagggg
gtcccctccccctccatacagtttttcagctgtgacagcatgctcaaaatctctcccagg
tgcagtaaccggagcacagtgtggcagcccctggtgtcagaccctgagaccctgagtatc
cagaccaacatcagtttcaatgagagccgtaaggtgggccaggtccgcagccaggtcacc
ttccacaagccccaacaggtgaccgtccgctgtgaggccagcaacgagggaggagtcagc
aggagagacgtcaaactggtgtccagcactctgttctcccaggtggcagtgttggctgcg
gttctacccctggtggtcatcctcatcacctccatcatcatcctcatcgctgtgtggagg
aagaagcctcgctatgagattagatggaaggtgatagagtcagtgagtctggatggccat
gagtacatctacgtcgaccccatccacctgccctacgacctggcctgggagatggctcga
gacagcctggtgctgggtcgtactcttgggtccggggcatttggcagggtggttgaggcg
actgcctatggtctcggtcattcccagtccagcacgaaggtggcagtaaaaatgctcaaa
tccacagccaggaggagtgagacccaggctctgatgtcagagctgaagatcatgagccac
ctggggcctcacctcaacatcgtcaacctgctgggagcctgcaccaaacagggtcctctc
tacctggtgacggagtactgtcgctatggagacctggtggactacttacacaggaacaag
cacacgttcctgcagtactacgctgagaagaaccaggaggactctggttgccgcgtctct
ggagggagcacccctctcagccagaggaaaggctacgtgtcgtttggcagtgagtctgac
ggtggctacatggacatgagtaaggacgagcccacggtgtacgtccccatgcaggagctt
aaagacaccatcaaatacactgacatccaaccttctccatatgagtcgccctaccagcac
cacctttaccaggaacaagaccagaccacagtggacagtgccctggtcatcagtgactgc
cctaccctcagctattctgacctcattggcttcagctaccaggtggccaagggcatggag
ttccttgcctccaagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgt
gaggggaagctggtgaagatctgtgactttggtctggccagagacatcatgcacgactcc
aattacgtctccaaaggcagcacgttccttcctcttaagtggatggccccagagagtatt
ttccataacctgtacaccaccctgagtgacgtgtggtcctatggcatcctgctctgggag
atcttcaccctgggaggagccccctaccctgatctgcccatgaatgagctgttctacagt
gccttaaagagaggatatcgcatggccaaacctaaccacgccaccgatgaagtttatgaa
gtcatgcagaagtgctgggatgagaagtacgagagaaggccagagttctcttttctggtt
cacacaatggggaacatgctcacagacagctataaaaagagatactgccaggtcaacgat
gagttcttcaagcgtgaccacccagccgtggtccgcaccaaacccaggctctcctctcac
ttccccactccggccctaaccccgtccaccgcccctgccaccccccaggacacaaacccc
taccccctcactggggacttcagatccgaggcagatggtgaggaagcttcctacaatgac
tacatcatccccatcccagaccccaagcctgaggaggaagtctgctccgaggctaacgac
atgccaacgaaaagcctcgcaagttctcgggctctggaggacgaggaggctgattccatc
tcccaagagacagtggaggcagacaccattccagaggaaaaatatctccatgccaaccag
gccctgattccactggagtcctctggaacaccggaagcggaagacagcttcctgtaa
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