Oncorhynchus gorbuscha (pink salmon): 124013705
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Entry
124013705 CDS
T07892
Name
(RefSeq) interferon regulatory factor 5-like isoform X1
KO
K09446
interferon regulatory factor 5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124013705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124013705
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
124013705
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
ORF29
Motif
Other DBs
NCBI-GeneID:
124013705
NCBI-ProteinID:
XP_046184098
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Position
LG25:16748831..16759598
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AA seq
520 aa
AA seq
DB search
MMSAQPRRIRLKPWLLAQVNSGRYPGLQWLSPDHRIFQIPWRHATRHLPTSEEENTIFKA
WALETGKYQEGLDEPDPAKWKANLRCALNKSREFKLKYDGTKETPVQPYKIYEVCDQPCN
GDTVDEDEEEMPNIVGLSIDPRISDPHSFQTFPTAHRIDFPFSSALNDRYGTPHHTPMYS
NPNGSITMAAHLPQPTMAPPEFSADVPLVVKLEHGDFVHPGPVGPSNSLGMGGGSMQPPV
VTEISPMVPSAASVAPVDPNPGADPMEAMSGVQNQDEGQAVPPYKYDLLNSLPLTDLDMN
FQYRGRKMGSLTVSNHQGCRLYYGHLEPTPEQVDLFGPVNLNQVLFPGSADIQNEKQRFY
TEHLLDVMDRGLILEIWEQDIYAIRLCQCKVYWSGPGVDEQGPPNPMERERKYKVFSLNN
FLHGLILFQKGETPTPPPFELYFCFGEDWPDQRKPKEKKLIVVQVVPVVARILTEMFSGD
LSWSTDSIRLQISNPDLKDQTVEQFKELQRLLQSQHGLGP
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgcgcagcctcggaggatccgcctaaagccctggctgttagcccaggtgaac
agcgggaggtacccaggcctgcagtggctcagcccggaccaccggatcttccagatcccc
tggagacacgccacaagacacctgcccacctctgaggaagagaacaccatcttcaaggcc
tgggctctggagacggggaagtaccaggagggtctggatgagcctgacccagccaagtgg
aaggccaacctgcgctgtgccctcaacaagagccgggagttcaaactgaaatacgacggc
accaaggagacacccgtccagccctacaagatctacgaggtctgtgaccagccctgcaat
ggagacacagttgatgaagatgaggaggagatgccgaatattgttggactctccattgac
cccagaattagtgacccacacagttttcagacattccctactgcacataggatagacttt
cccttcagctccgctctcaatgacagatatggcaccccccatcacacccctatgtactcc
aatcccaacgggagcattaccatggcagcgcatctccctcagccaaccatggctccccca
gagttttctgccgacgttccattggtggtgaagttggaacatggggactttgtgcaccct
ggacccgtaggaccctccaacagcctggggatgggtggagggagcatgcagcctcctgtg
gtcaccgagatatcccccatggttccttctgctgcatctgtggctccggttgaccctaac
ccaggtgccgaccccatggaggccatgtcaggagtccagaaccaggatgaagggcaggcg
gtgccaccctacaaatatgacctgctgaacagcctgccattgactgacctagacatgaat
ttccagtaccggggtcgcaagatgggttccttgacggtgagtaaccaccaaggctgccgg
ctgtactacggccacctggagcccaccccagagcaggtggacctgttcggccctgtcaac
ctcaaccaagttctcttccctggctcggccgacatccagaacgagaagcagcggttctac
acagagcacctgctggatgtgatggaccgaggcctgatcctggagatctgggagcaggat
atatacgctatcaggttgtgtcagtgcaaggtgtattggtctgggccgggcgttgacgag
caggggcctcccaaccctatggagagggagaggaagtacaaagtgttcagcctcaataac
ttcctgcacgggctcatcttgttccagaaaggtgaaactcccaccccaccaccgtttgag
ctctacttttgctttggggaggactggccagatcaacggaaacccaaggagaagaagctc
atcgttgtgcaggtggtccctgtggtggcgcggatcctaacagagatgttttccggagac
ctgtcctggtccacagacagcatccggctgcagatctccaacccagacctgaaggatcag
acggtggaacagttcaaggaactccagaggcttctccagagtcagcatggcctgggaccc
tga
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