Oncorhynchus gorbuscha (pink salmon): 124017838
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Entry
124017838 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124017838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124017838
03032 DNA replication proteins [BR:
ogo03032
]
124017838
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124017838
mRNA cycle factors
Common to processing body (P body) and stress granule
124017838
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
124017838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
124017838
NCBI-ProteinID:
XP_046189026
LinkDB
All DBs
Position
Unknown
AA seq
820 aa
AA seq
DB search
ADLLTLYERVILTDIEFSDSQNLDQALWKNVFYQVIEHFRQLLKDPSGDSTLRITPMLLT
LLDEGTVFFDALLQKLQTVFQFKLEDYMDGMAIRPRPLRKTVKYALISAQRCLICQGDIA
RYREQASDSANYGKARSWYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAAS
NPILTAKESLMSLFEEAKRKADQMERRRKQESEGGXQGPGGSRRRTGEEGARVEIWVGPI
GQAGVPSSHRGGSESSRDSEQEGELGNLSPSDLNKRFTLSFLHAHGKLFTKVGMESFPSV
ASRVLQEFTVLLQHSPSPLGSTRMLQIITINMFTIHNAQSRGGDSEVRSVLQEQSTALGL
TMFSLLVQRCTELLRDTPAEPIPAEEREEGQEGMVRVSAFPLDLRELLPSVKVWSDWMLG
HPNQWNPPPCRIDCSLDVWRSLADLCNALARVDHGEAPLYKADGDGGEGDEELRLLLLEE
DRLLAGFVPLLAAPQEPCYVDCTGDTAIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKY
VSMATSPQPGRPGDARSRQDSQTERESDDVIVEAESSVSDGDDGSEDDIRELRARRSALT
NKLAEQQRRRDKIQAVLQTCGQLELEVRPLFLVPDTNGFIDHLTGLKTLLQSGTYIVVVP
LIVITELDGLAKGQESCDGSGSGRGGSGCRGNAGGGGPTHARSVQEKAKVAVAFLERGFE
AREPCLRALTSRGSQLESIAFRSEDTSGQQGNNDDVILSCCLHYCKDEAKSLMPAQTNGP
VRLRREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAKVG
NT seq
2464 nt
NT seq
+upstream
nt +downstream
nt
agctgacctgttgaccctgtatgagcgggtgatcctaacagacatagagttcagtgacag
tcagaacctggaccaggctctatggaagaacgtgttctaccaggttatagagcacttcag
gcagctcctcaaagaccccagcggagactcaaccctgcgcatcacccccatgctgctcac
tctgctggacgaggggactgtgttctttgatgcactgctgcagaagcttcagacggtgtt
tcaatttaaactggaggattacatggacggcatggccatcagaccacgtccactacgcaa
gacggtgaagtatgctctgatcagtgcccagcggtgtttgatctgtcagggggacatcgc
ccgttaccgagagcaagccagcgactcggctaactacggcaaggcccgcagctggtacct
gaaggcccagcagattgctcctaagaacggacgaccttacaaccagctggccctgctggc
tgtttacacgaagaggaagttggatgcagtgtattactacatgcgtagccttgctgcctc
caaccccatcctcactgccaaggagagtctcatgagtctgtttgaagaggccaaacgcaa
ggcagaccagatggagcggaggaggaagcaggagtcggagggggggntccaggggcccgg
gggttcgaggaggaggacgggggaggagggggccagggtggagatctgggtcggccctat
tggacaggcaggggttccatcatcacaccgtgggggcagcgagtccagcagagactctga
acaggaaggagaactgggcaaccttagccctagtgatctcaataagaggtttactctcag
cttcctccacgctcacggaaaactcttcactaaagtgggtatggagtcgttcccttcggt
ggccagtcgggttctccaggagttcacagtgctgctccaacacagcccctcccctctggg
cagcacacgcatgttgcagatcatcaccattaacatgttcacgatacacaacgctcagag
cagaggaggagacagtgaggtgagatctgtgttacaggaacagagtacagctctgggtct
gaccatgttctctctgctggtccaacgctgcacagagctgctgagagacacacccgcaga
gcccatcccagcggaggagagagaagaggggcaggaggggatggtgagagtttctgcctt
tccattggacctgagggagctgctgcctagcgtcaaggtctggtctgattggatgcttgg
acaccccaaccaatggaatccaccaccttgccgtatagactgtagtcttgatgtgtggcg
tagcctggcagacctgtgtaatgcgttggcgcgtgtcgaccacggcgaggcgccactgta
caaggcagacggggacggaggcgagggggatgaggagctccgcctgctgctattggagga
ggacaggctactggccggcttcgtcccgctgctcgctgccccacaggaaccctgctacgt
agactgcaccggggatacagcgatagctgctgactgtaaaagggtaacagtattgaagta
tttcctggaggctctgtgtggacaggaagaacctctcctggcttttaaaggagggaagta
cgtctccatggcaacctctccccaacccggtcgccccggcgacgcacgcagcagacagga
ctcgcagacagagagagagagtgatgacgtcatcgtggaggcggagtcgtctgtgtcgga
cggtgatgatggcagtgaggacgacatccgagagctccgggccagacgcagcgccctcac
caacaaactggctgagcagcagagacgcagggacaagatacaggcggtgttacagacgtg
tggtcagttggagttggaggtccgtcctcttttcctggtccccgacaccaacggtttcat
cgaccacctcaccggcctcaagacactgcttcagtctgggacctacattgtggtggtgcc
cctcatcgtgataacagagttggatggtctggcaaaagggcaggagagctgcgatggctc
tggcagtgggcgtggtggcagtggttgtcgtggaaacgccggtggtggtggaccgaccca
cgcccggtcggtccaggagaaggctaaggttgccgtggcgtttctggagcgagggttcga
ggccagggagccctgtctcagagcgctgaccagcagaggaagtcaactggagtctatcgc
cttccgcagcgaagacacctccggacaacagggaaacaatgatgatgtcatcttgtcctg
ctgtctccactactgcaaagatgaggctaagagcttgatgcctgcacagacaaacggtcc
ggtgcgtttgcgtcgggaggtggttctcctgacagatgaccgtaacctgcgggtcaaagc
cctgaccaggaatgtgccggtcagagacatccccgcattcctcacctgggccaaagtggg
ctga
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integrated database retrieval system
