Oncorhynchus gorbuscha (pink salmon): 124037008
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Entry
124037008 CDS
T07892
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124037008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124037008
Enzymes [BR:
ogo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
124037008
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
124037008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
124037008
NCBI-ProteinID:
XP_046207581
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All DBs
Position
LG06:11465755..11476321
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AA seq
456 aa
AA seq
DB search
MEEKLYGSVPVPSEYLQQWIQSAQQLQALQGQYPGINHHHSPHPHYTEEPREERVMAHAH
MAVNDELMAQQEPANLAKAPAKKRGRTAQPKEPKPPKMPKPPKAKPGPKPKKGKEGQEAD
GTQEKMDETVQKVRKKRDRFKGMTEDEVMSRTLTDILDYNLDYVIIGINPGLVAAYVGRW
FPGPGNHFWKCLFLSGFTDEQLNHMSDTSLPAKYKIGFTNMVARTTPGSKDLSTKELREG
ALILVEKLKKYKPLIAVFNGKCIYEMFCREMFGKKPKKLDFGLQPHKIPDCEVALYLMPS
SSARCAQFPRAQDKVHFYIKLRELRDQLRGVARTDDIQELEYTFDLGLAKEDAKRMAIKE
EAYDPGYEAAFGGAYGEGGPGPEEGQSNGNGHCNFSSAENTVSDAVEKADTSQLPAATAT
ATEGQLPDGQWMMQSFADQIPDIGGSKEPQAWAGNV
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagctgtatggatcagtgcctgtcccctcggaatatcttcaacagtggatt
cagtcagctcaacagcttcaggctctgcagggccagtatccgggcatcaaccatcaccac
agtcctcaccctcactacacagaggaaccaagagaggagagagtaatggcacatgcacat
atggctgtcaatgatgagctcatggctcagcaagaacctgccaatttagcgaaagctcca
gcgaaaaagcgagggagaacagcacaaccaaaggaacccaagccacccaaaatgcccaag
ccccccaaggccaaaccgggccccaagcccaagaaaggcaaggagggtcaagaggctgac
ggcacgcaggagaagatggacgagaccgtccagaaggtcaggaagaaacgagaccgattc
aagggcatgacggaagatgaggtcatgagcagaactctgactgacattcttgactacaac
ttggactatgtcattattggaatcaacccaggtctggtggcagcctatgttggacgatgg
ttccctggccctggaaatcatttctggaagtgcctgttcttgtctggattcactgatgag
cagctcaaccacatgagtgacaccagcctgccagcgaaatataagatcggtttcacaaac
atggtggcaaggacaacgcctggaagcaaagacctttcaaccaaagagctacgtgagggt
gccttaattctcgtggaaaagctgaagaagtacaagcctctcatagctgttttcaatgga
aaatgtatctatgaaatgttctgcagagagatgtttggaaaaaagcccaagaaacttgac
tttggtctgcagccacacaagatacctgactgtgaagtggcgttgtatttgatgccgtcg
tccagtgcccgctgtgcccagttcccccgtgcccaggacaaagtgcacttctacatcaag
ctgagggaattaagggaccagctcaggggtgtggccagaacagacgacattcaggagttg
gagtacacctttgacctgggactggccaaggaggacgccaagaggatggcgattaaagag
gaggcgtacgacccgggctacgaggcggcctttggcggcgcatatggcgagggtgggccg
gggcctgaagagggccagagcaatggcaacgggcactgtaacttctcgtcggcggaaaac
acagtttcagacgctgtcgagaaggcagacacttctcaacttcctgccgccaccgccact
gccacagagggacaactcccggacggacagtggatgatgcagtcttttgctgatcagatt
ccagacattgggggctctaaagagccccaggcatgggcgggcaatgtataa
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