KEGG   Oncorhynchus gorbuscha (pink salmon): 124041881
Entry
124041881         CDS       T07892                                 
Name
(RefSeq) ATP-dependent RNA helicase A-like
  KO
K13184  ATP-dependent RNA/DNA helicase DHX9 [EC:5.6.2.6 5.6.2.4]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogo03041]
    124041881
   03012 Translation factors [BR:ogo03012]
    124041881
Enzymes [BR:ogo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     124041881
    5.6.2.6  RNA 3'-5' helicase
     124041881
Spliceosome [BR:ogo03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    124041881
Translation factors [BR:ogo03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    124041881
SSDB
Motif
Pfam: dsrm OB_NTP_bind Helicase_C DEAD HA2_N HA2_C Dicer_dimer ResIII AAA_19 nSTAND3 AAA_14 ATPase
Other DBs
NCBI-GeneID: 124041881
NCBI-ProteinID: XP_046215945
LinkDB
Position
LG08:57434139..57454278
AA seq 1241 aa
MADIKNFLYAWCGKKKLTPSYDIRAAGNKNRQKFLCEVRIEGFNYTGMGNSTNKKDAQAN
AARDFVNYLVRVGEMNAAEVPALGVSGPDFSVPDCGGGGEGGNVGFGSLPPSGPIPPHLV
VKAEQVNAPSAPVPGVTGLGYSGGSGNFSGGGTSSNAPWDRGANLKDYYSKRDEQEAQAT
LESEEVDLNAGLHGNWTLENAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMQLFVR
QLGRKIIAREHGSNKKLAAQSSALSIVRQLYHLGVIEPYSGVTKKKEGEILEAFEVNVVD
ELQHQLQSMAQELGVAIPPPPPDPSTPVSLVQGKMAVFEPSQKQSMAGVVPWSPPQVNWN
PWTSSNIDDGPLAFCTPEQISTDLHHELTYQLEQDQSLQKVIGERDGLPVKKFEEEIMTA
VQGSSVVIIRGATGCGKTTQVPQYILDQFIKSGRASECNIIVTQPRRISAVSVAERVSYE
RGEDVGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINT
DFLMVVLRDVVQTYPEVRIILMSATIDTTMFREYFFNCPVIEVFGRTFPVQEYFLEDCIQ
MTHFIPPPSDRKRKDKDEEGGDEEANCNVICGPEYTPETKRSMAQMNEKETPFELVEALL
KYIETLQVAGAVLIFLPGWNLIYSMQKHLEMNPHFGSQRYLILPLHSQIPREEQRRVFEP
VPENITKVILSTNIAETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWGSKTNLEQR
KGRAGRVRAGFCFHLCSRARFDKLETHMTPEIFRTPLHEVALSIKLLRLGAIGHFLSKAI
EPPPLDAVIEAEHTLRELDALDTNDELTPLGRILAKLPIEPRLGKMMIMGCIFNVGDAVC
TISAASCFPEPFINDGKRLGYVHRNFAGTRFSDHVALLSVFQAWDDVRMGGEDAESRFCE
HKRLNMSTLRMTWEAKVQLKEILINSGFPEECLMTQMFNNVGPDNNLDVVISLLTYGSYP
NVCYHKEKRKILTTEGRNALIHKCSVNCPFSSQDMTYPSPFFVFSEKIRTRAISAKGMTL
VSPLQLILFASKKITSNGEIIELDDWIKLKIPHNVAGCIAALRAGMEALVVEVTKDPEYI
KQLDPTNERMLNIIRQISKPSAAGLNLMVNNKRFGDGPRPPKMGRFDGGGGGGYQGGGGG
GYRGGGYRGGGGYQGGGGGGYRGGGGGGYRGGGGGGYRGGG
NT seq 3726 nt   +upstreamnt  +downstreamnt
atggcggacatcaagaacttcctgtatgcttggtgtgggaagaagaaactaacacccagc
tatgacattcgagccgctggaaacaaaaaccgacagaagtttctgtgtgaggttcgtatt
gagggattcaactacactggaatgggaaactccaccaataagaaggatgcccaggcaaat
gctgctagagactttgtcaattatcttgtccgagttggagaaatgaatgcagcagaagtc
ccagcccttggggtaagtggacctgacttcagtgtacctgactgtggaggagggggtgaa
ggagggaatgttggctttggaagtcttcctccaagtggacctatccctcctcacctggtt
gtgaaagctgagcaagtgaatgcaccttctgcgccagtcccaggtgtcactggtttggga
tattcgggcggtagcggcaatttttccggaggtggcacaagcagcaatgctccgtgggat
cgtggggccaatctaaaggactactactcaaagagagatgagcaggaggcacaggcgact
ctggagtctgaggaggtagatctgaacgcgggactccatggcaactggactttagagaac
gccaaggcccgtctgaaccaatttttccagaaggagaagaatcaaacagattacaaatac
agccaagttgggcctgaccacaacaggagctttattgccgagatgcagttatttgtaaga
cagcttggcagaaagataattgcccgcgagcatggctctaacaagaagcttgcagcccag
tcctctgcgctgtctatcgtccgtcaactttaccatctgggtgtcattgagccttattct
ggcgtcactaagaagaaagagggagaaattttggaagcttttgaggtgaatgtggtggat
gaactgcaacatcagctgcagagtatggcccaagaactgggtgttgcaattccacctcca
ccacctgatccaagtactccagtgtctttggtccaagggaagatggctgtgtttgagccc
tcccagaaacagagcatggccggggtggtgccctggtcccctccgcaagtcaactggaac
ccctggaccagcagcaatattgacgatggaccactagcattttgcaccccagagcaaatc
agcactgacctccatcatgagctgacttatcaattggaacaagatcaaagcctacagaag
gtcattggggagcgagacgggcttccagtgaagaaatttgaggaggagataatgactgct
gttcagggcagctcagtggtgatcattcgaggggcgaccggctgtggcaaaaccacccag
gttcctcagtacatcctggatcagttcatcaagagtgggagggcgtccgagtgtaacatt
attgtaacccagccccggcgtatcagtgcagtgtctgtggcagagcgtgtttcctacgag
agaggagaggatgtcggtaagagctgtgggtacagcgtccgctttgaatccatcctccca
cgaccccatgccagcatcatgttctgcactgttggtgtgttactgcggaagctggaagca
ggtattcgcggtatcagccatgtgattgtggatgaaatccacgagagagacatcaatact
gacttcctcatggtggtgctgagggatgtggtccagacctacccagaggtccgcatcatc
ctcatgtctgccaccatcgacaccaccatgtttagagagtacttcttcaactgccctgtc
atcgaggtgttcggccgcacattcccagtacaagagtactttttggaagattgtattcag
atgacacatttcattccacctccgagtgatagaaagaggaaggacaaggatgaggaagga
ggagatgaagaggccaactgtaatgtgatatgtgggccagagtacaccccagagactaag
cgctctatggcccagatgaatgagaaggagactccctttgagctggtggaggccctgctg
aagtacatcgagaccctccaggtggccggggccgtgctcatcttcctgcccggctggaac
ctcatctactccatgcagaaacacctggagatgaacccacactttgggagtcaacggtac
ctgattctgcctctccactctcagatccccagagaggaacagaggagggtatttgagcct
gtgcctgaaaacatcaccaaggtgatcttgtccacaaacattgcagagaccagtattact
atcaatgatgtagtatatgtcatcgactcttgcaagcagaaagtgaaactgttcacgtct
cacaacaacatgaccaactacgccacagtctggggctccaagaccaacctggagcaaagg
aagggtcgcgccggccgtgtccgggctggcttctgctttcatctgtgtagcagagcacgc
ttcgacaaactggagacccatatgacccctgagatattccgtactcctctccacgaggta
gccctgagcatcaagctgctgagactaggagccattggccatttcctttccaaggccatc
gagccccctcccctggacgcggttatagaggcagaacacacactgagagaactggatgct
ttggacacaaatgacgagttgactccgcttggtcggatccttgcaaagcttccaatcgag
ccgcgtctggggaagatgatgattatgggctgcatattcaatgttggagatgcggtgtgc
acgatctcagcagcctcctgcttcccagagcccttcatcaatgatggcaagcgcttgggc
tatgtgcaccgcaactttgctggcacccgcttctcagaccacgtggcccttctgtcagtc
ttccaggcttgggacgatgtgagaatgggaggtgaggatgcagagtccagattctgtgaa
cacaagaggctcaacatgtccacactgaggatgacctgggaggcaaaagtgcagctgaag
gagatcctcatcaactctggcttccctgaggagtgcttgatgacacagatgttcaataac
gttggacccgacaacaaccttgacgtggtcatctctctcctgacatacggctcctatccc
aacgtgtgctaccataaggagaagaggaagattctcaccactgaggggcgcaatgcactc
atccacaaatgctccgtcaactgccccttcagcagccaggacatgacctacccatcaccg
ttcttcgtctttagcgaaaagatccggactcgagccatctcagccaaaggaatgacacta
gtcagcccactccagctgatcttgtttgcctccaagaaaatcacatcaaacggggaaatc
attgaactggatgattggatcaaactgaagataccgcataacgtggctggctgcatagct
gctttgagggctggaatggaggcacttgttgtagaagtcaccaaagaccctgagtacatc
aaacagctggatcccacaaacgagcgcatgctcaacatcatccgtcaaatctccaagccc
tccgcagctgggcttaacctcatggtcaacaataaacgttttggagatggtccacgtcct
cccaagatgggcaggtttgacggaggaggcggtggaggataccagggaggaggcggtgga
ggatacaggggaggaggttacagaggcggtggaggataccagggcggcggtggtggaggt
tacaggggcggtggtggtggaggttacaggggcggtggtggtggaggttacaggggcggt
ggttag

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