Oncorhynchus gorbuscha (pink salmon): 124041881
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Entry
124041881 CDS
T07892
Name
(RefSeq) ATP-dependent RNA helicase A-like
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124041881
03012 Translation factors [BR:
ogo03012
]
124041881
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124041881
5.6.2.6 RNA 3'-5' helicase
124041881
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124041881
Translation factors [BR:
ogo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124041881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
ResIII
AAA_19
nSTAND3
AAA_14
ATPase
Motif
Other DBs
NCBI-GeneID:
124041881
NCBI-ProteinID:
XP_046215945
LinkDB
All DBs
Position
LG08:57434139..57454278
Genome browser
AA seq
1241 aa
AA seq
DB search
MADIKNFLYAWCGKKKLTPSYDIRAAGNKNRQKFLCEVRIEGFNYTGMGNSTNKKDAQAN
AARDFVNYLVRVGEMNAAEVPALGVSGPDFSVPDCGGGGEGGNVGFGSLPPSGPIPPHLV
VKAEQVNAPSAPVPGVTGLGYSGGSGNFSGGGTSSNAPWDRGANLKDYYSKRDEQEAQAT
LESEEVDLNAGLHGNWTLENAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMQLFVR
QLGRKIIAREHGSNKKLAAQSSALSIVRQLYHLGVIEPYSGVTKKKEGEILEAFEVNVVD
ELQHQLQSMAQELGVAIPPPPPDPSTPVSLVQGKMAVFEPSQKQSMAGVVPWSPPQVNWN
PWTSSNIDDGPLAFCTPEQISTDLHHELTYQLEQDQSLQKVIGERDGLPVKKFEEEIMTA
VQGSSVVIIRGATGCGKTTQVPQYILDQFIKSGRASECNIIVTQPRRISAVSVAERVSYE
RGEDVGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINT
DFLMVVLRDVVQTYPEVRIILMSATIDTTMFREYFFNCPVIEVFGRTFPVQEYFLEDCIQ
MTHFIPPPSDRKRKDKDEEGGDEEANCNVICGPEYTPETKRSMAQMNEKETPFELVEALL
KYIETLQVAGAVLIFLPGWNLIYSMQKHLEMNPHFGSQRYLILPLHSQIPREEQRRVFEP
VPENITKVILSTNIAETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWGSKTNLEQR
KGRAGRVRAGFCFHLCSRARFDKLETHMTPEIFRTPLHEVALSIKLLRLGAIGHFLSKAI
EPPPLDAVIEAEHTLRELDALDTNDELTPLGRILAKLPIEPRLGKMMIMGCIFNVGDAVC
TISAASCFPEPFINDGKRLGYVHRNFAGTRFSDHVALLSVFQAWDDVRMGGEDAESRFCE
HKRLNMSTLRMTWEAKVQLKEILINSGFPEECLMTQMFNNVGPDNNLDVVISLLTYGSYP
NVCYHKEKRKILTTEGRNALIHKCSVNCPFSSQDMTYPSPFFVFSEKIRTRAISAKGMTL
VSPLQLILFASKKITSNGEIIELDDWIKLKIPHNVAGCIAALRAGMEALVVEVTKDPEYI
KQLDPTNERMLNIIRQISKPSAAGLNLMVNNKRFGDGPRPPKMGRFDGGGGGGYQGGGGG
GYRGGGYRGGGGYQGGGGGGYRGGGGGGYRGGGGGGYRGGG
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggcggacatcaagaacttcctgtatgcttggtgtgggaagaagaaactaacacccagc
tatgacattcgagccgctggaaacaaaaaccgacagaagtttctgtgtgaggttcgtatt
gagggattcaactacactggaatgggaaactccaccaataagaaggatgcccaggcaaat
gctgctagagactttgtcaattatcttgtccgagttggagaaatgaatgcagcagaagtc
ccagcccttggggtaagtggacctgacttcagtgtacctgactgtggaggagggggtgaa
ggagggaatgttggctttggaagtcttcctccaagtggacctatccctcctcacctggtt
gtgaaagctgagcaagtgaatgcaccttctgcgccagtcccaggtgtcactggtttggga
tattcgggcggtagcggcaatttttccggaggtggcacaagcagcaatgctccgtgggat
cgtggggccaatctaaaggactactactcaaagagagatgagcaggaggcacaggcgact
ctggagtctgaggaggtagatctgaacgcgggactccatggcaactggactttagagaac
gccaaggcccgtctgaaccaatttttccagaaggagaagaatcaaacagattacaaatac
agccaagttgggcctgaccacaacaggagctttattgccgagatgcagttatttgtaaga
cagcttggcagaaagataattgcccgcgagcatggctctaacaagaagcttgcagcccag
tcctctgcgctgtctatcgtccgtcaactttaccatctgggtgtcattgagccttattct
ggcgtcactaagaagaaagagggagaaattttggaagcttttgaggtgaatgtggtggat
gaactgcaacatcagctgcagagtatggcccaagaactgggtgttgcaattccacctcca
ccacctgatccaagtactccagtgtctttggtccaagggaagatggctgtgtttgagccc
tcccagaaacagagcatggccggggtggtgccctggtcccctccgcaagtcaactggaac
ccctggaccagcagcaatattgacgatggaccactagcattttgcaccccagagcaaatc
agcactgacctccatcatgagctgacttatcaattggaacaagatcaaagcctacagaag
gtcattggggagcgagacgggcttccagtgaagaaatttgaggaggagataatgactgct
gttcagggcagctcagtggtgatcattcgaggggcgaccggctgtggcaaaaccacccag
gttcctcagtacatcctggatcagttcatcaagagtgggagggcgtccgagtgtaacatt
attgtaacccagccccggcgtatcagtgcagtgtctgtggcagagcgtgtttcctacgag
agaggagaggatgtcggtaagagctgtgggtacagcgtccgctttgaatccatcctccca
cgaccccatgccagcatcatgttctgcactgttggtgtgttactgcggaagctggaagca
ggtattcgcggtatcagccatgtgattgtggatgaaatccacgagagagacatcaatact
gacttcctcatggtggtgctgagggatgtggtccagacctacccagaggtccgcatcatc
ctcatgtctgccaccatcgacaccaccatgtttagagagtacttcttcaactgccctgtc
atcgaggtgttcggccgcacattcccagtacaagagtactttttggaagattgtattcag
atgacacatttcattccacctccgagtgatagaaagaggaaggacaaggatgaggaagga
ggagatgaagaggccaactgtaatgtgatatgtgggccagagtacaccccagagactaag
cgctctatggcccagatgaatgagaaggagactccctttgagctggtggaggccctgctg
aagtacatcgagaccctccaggtggccggggccgtgctcatcttcctgcccggctggaac
ctcatctactccatgcagaaacacctggagatgaacccacactttgggagtcaacggtac
ctgattctgcctctccactctcagatccccagagaggaacagaggagggtatttgagcct
gtgcctgaaaacatcaccaaggtgatcttgtccacaaacattgcagagaccagtattact
atcaatgatgtagtatatgtcatcgactcttgcaagcagaaagtgaaactgttcacgtct
cacaacaacatgaccaactacgccacagtctggggctccaagaccaacctggagcaaagg
aagggtcgcgccggccgtgtccgggctggcttctgctttcatctgtgtagcagagcacgc
ttcgacaaactggagacccatatgacccctgagatattccgtactcctctccacgaggta
gccctgagcatcaagctgctgagactaggagccattggccatttcctttccaaggccatc
gagccccctcccctggacgcggttatagaggcagaacacacactgagagaactggatgct
ttggacacaaatgacgagttgactccgcttggtcggatccttgcaaagcttccaatcgag
ccgcgtctggggaagatgatgattatgggctgcatattcaatgttggagatgcggtgtgc
acgatctcagcagcctcctgcttcccagagcccttcatcaatgatggcaagcgcttgggc
tatgtgcaccgcaactttgctggcacccgcttctcagaccacgtggcccttctgtcagtc
ttccaggcttgggacgatgtgagaatgggaggtgaggatgcagagtccagattctgtgaa
cacaagaggctcaacatgtccacactgaggatgacctgggaggcaaaagtgcagctgaag
gagatcctcatcaactctggcttccctgaggagtgcttgatgacacagatgttcaataac
gttggacccgacaacaaccttgacgtggtcatctctctcctgacatacggctcctatccc
aacgtgtgctaccataaggagaagaggaagattctcaccactgaggggcgcaatgcactc
atccacaaatgctccgtcaactgccccttcagcagccaggacatgacctacccatcaccg
ttcttcgtctttagcgaaaagatccggactcgagccatctcagccaaaggaatgacacta
gtcagcccactccagctgatcttgtttgcctccaagaaaatcacatcaaacggggaaatc
attgaactggatgattggatcaaactgaagataccgcataacgtggctggctgcatagct
gctttgagggctggaatggaggcacttgttgtagaagtcaccaaagaccctgagtacatc
aaacagctggatcccacaaacgagcgcatgctcaacatcatccgtcaaatctccaagccc
tccgcagctgggcttaacctcatggtcaacaataaacgttttggagatggtccacgtcct
cccaagatgggcaggtttgacggaggaggcggtggaggataccagggaggaggcggtgga
ggatacaggggaggaggttacagaggcggtggaggataccagggcggcggtggtggaggt
tacaggggcggtggtggtggaggttacaggggcggtggtggtggaggttacaggggcggt
ggttag
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integrated database retrieval system