KEGG   Oncorhynchus gorbuscha (pink salmon): 124048818
Entry
124048818         CDS       T07892                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    124048818
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ogo03000]
    124048818
   04121 Ubiquitin system [BR:ogo04121]
    124048818
   03036 Chromosome and associated proteins [BR:ogo03036]
    124048818
Enzymes [BR:ogo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     124048818
Transcription factors [BR:ogo03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    124048818
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     124048818
Chromosome and associated proteins [BR:ogo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    124048818
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     124048818
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like DUF7885 F-box JmjC Cupin_8 LRR_At1g61320_AtMIF1 PsbP
Other DBs
NCBI-GeneID: 124048818
NCBI-ProteinID: XP_046225873
LinkDB
Position
LG11:48180614..48233158
AA seq 1405 aa
MEASAESGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSDSYNTHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGIRMPDPEFTVSQIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLKLKRRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVHSKFRYPFYHEMCWYVLERYVHCLTKRSHLTPEFCREPLLI
DLETKLSTESPSSDSRSQDMDEEESCETQQGRDEQGDRSAFDDPCSPDNRKGKSSGLRHL
KAALSNDSEDSCIPTSTQPPEFPKTPFGSSVSESPSKWTHLTEFELKGLKALVEKLEALP
ENKKGVPDGIKDPQALLEDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAKVRMHQQRPPN
RPKPKMAASSPAAAVKLSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPG
RMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEDKFNRMLMECSICNEIVHPLCL
KVKDSGGVVNDELPNCWECPKCNHSGKTGKVSIYQKRGPGFKYASNLPGSLLKDSRLNRD
IKEEPDPPSLPTSPTGTTATVATVKRKAERDDTPKTKAEESPPLKKRSPMLSLGGLPRPR
PEDNPLRKKRMLFDIKDEDEPPVVKKKKKPPKPDDLLIPKLLKTIKQEQVDEDDEHKDHE
DEEDRCTGDRVVTKGKREEEEEDGDEEEEKDGGVEDSKDGTVKTMLSPLLRTSRARESDQ
SCSSSPRAGPSSVGCDAPEKTPGQLKARKRRRLPNKELSKELSKELNLEIQKTEDCLANQ
NRRPLKREDSPANNSRRPLKTEDTSTNPNRRPPKTEDSPANHNRRPIKTEDGLSNHNRRP
LRTEDCLVNQNHRPMKTEPESDGEEPKPKRPLNNCTSDLGDWLHPRGRELNGMPRQLSPL
GWNRSPPITPICPRPPPCRSPPKCVQMERHVIRPPPISPPPDRLPLEDGQTHMMHREVWM
AVFGHLAHRDLCVCMRVCKTWNRWCCDKRLWTRIDLNRCKSITPLMLSGIIRRQPVALDL
SWTNISKKQLSWLINRLPGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQM
RDLLSPPTDNRPGQLDNRSKLRNVVDLRLAGLDITDTSLRLLIRYTPQLTRLDLSYCNHV
TDQSVNILTAAGTTTRDSLTDINLSVCNRVTDQSLAYFKRCGSICHIDLRYCKQVTKEGC
ERFVAEMSVSVQFGLVEEKLLQKLC
NT seq 4218 nt   +upstreamnt  +downstreamnt
atggaagcgagtgcagaatctggacgcaaactgcgctccatctgccggacaatgtatgac
gaaaacgaggacttctctgacgttgaagaaattgcaaatgtcaggggtttcaatctggag
gagaaacttgttagtgactcatacaacacacatttcgttcagttgatggatggcaaagat
ttcacttatgagtatgttcagagagaggcacttcagacccctcttattttcaaagccaaa
gatggactgggaatcagaatgcctgacccggagttcaccgtcagtcagattaaaggtttg
gttggtagccgtcgtgccgttgatgtgatggatgtgagcactcagaaaggctctgagatg
agcatggcccagtttgtccgctactatgagacgcctgaggaagagagggacaaactcttc
aatgttatcagcctagagttcagccacaccaaactggagaacctcatcaagaggcccact
gtggtggatttagtggactgggtggacaacatgtggcccttaaaactgaaacgaagacaa
accgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggagggaaggtgttctggctggtgcctccgacgcctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacatcttcctgggagaccgt
gcagatggctgccagagggtggagctgaaacagggctacaccttcttcatcccctctggc
tggattcatgcagtctacacccctgaggacacgctggtgtttggaggcaacattctgcac
agctttaacattcccatgcaactctccatctatgagatagagaataggactaaggttcat
tccaagttccgctacccattctaccatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcccatctcactccggagttctgcagagagcctctgctaatc
gacttggaaactaagctgagcacagagagcccctcctctgactcccggagtcaggacatg
gacgaggaggagtcctgcgagacgcaacagggacgggatgaacagggtgacaggtcagca
tttgatgatccctgctctcctgataacaggaagggtaaatccagcggccttcgacacctc
aaagctgccttgtccaatgattctgaggacagctgcatccccacctccacccagcctcca
gagttccccaaaaccccctttggctcgtcagtctcagagtctccgagtaaatggactcat
ctgactgagtttgaactgaagggcctcaaggcccttgtggagaaactggaagccctccct
gaaaataagaagggtgttccagacggcatcaaggacccccaggccctgctggaggacatg
aaggttgtcttgaaggaacatgaagatgatgaccccaaaatggctgccactggagtacct
gtggtgttctggcccaagaagtctgccaaggtgagaatgcatcagcagcggcctcccaac
agacccaaacccaaaatggcggcctcgtctcctgcggcggcggtcaagctgtcggccagc
cggagcacgtctggcgccaggaggagaaggacgcgttgtcggaagtgcgaggcgtgcctg
aggacagagtgtggagaatgccacttctgtaaagacatgaagaagttcggagggccaggt
cgcatgaaacagtcctgcatcatgaggcagtgcatagcgcctgtactgccccacacagcg
gtgtgtctggtgtgtggagaggcagggaaggaggacacagtggaggaagaggaggacaag
tttaaccgcatgctcatggagtgctccatctgcaatgagatagtccaccctctctgcctc
aaggtgaaagattctggtggagttgtaaatgacgagttgccaaactgctgggagtgtcca
aaatgcaaccattcagggaagacagggaaagtaagcatctatcaaaaaagaggaccaggg
ttcaagtacgcgtccaaccttcccgggtcgctgctgaaggactcgcgattgaaccgtgac
atcaaggaagagcccgacccgcccagtctgccaacatcacccactgggaccacggcaacc
gtggccacagtgaagaggaaggcggagcgtgacgacaccccaaaaacgaaagcagaggaa
tctcctcctctgaagaaacgttctcccatgctgtctctgggcgggctgccccgacccagg
cctgaggacaaccctctgaggaagaagaggatgctgttcgacatcaaagatgaggacgag
cctcctgttgtcaagaaaaagaagaagcccccaaaacctgatgaccttttgatccccaag
ctgttaaagaccatcaagcaagagcaagtagatgaggacgacgaacacaaagaccatgaa
gatgaagaggacagatgcacaggggacagggttgtaactaaagggaaaagagaagaggag
gaagaggatggagatgaggaggaggagaaagatggtggtgtagaggacagtaaagacggt
acagtaaagactatgctgagtccactgctacggacgtctagagccagagagagtgaccag
tcctgctccagctctccccgggcagggcccagcagtgtagggtgcgatgccccagagaag
acacctggccagctgaaggcacgcaagcgccgccgcctccccaacaaagagctgagcaag
gagctgagcaaagagctcaatctggagattcagaagaccgaggactgcctggccaatcag
aatcgcagaccactgaagagggaggacagcccagccaataacagccgtcgacccttgaaa
actgaggacacctcgaccaatccgaaccgcagaccaccaaaaacagaggactctcctgcc
aatcataaccgcaggccaattaagactgaggatggtctatccaatcacaaccgccggcca
ttgaggaccgaggactgcttagtcaatcagaaccacaggccaatgaagacagagcctgag
agcgacggggaggagcctaagcccaagcggccactcaacaactgcaccagtgacctcgga
gactggctccaccccagagggcgggaattaaacgggatgccccgccagctctcgcctctg
gggtggaatcgcagccctccgatcacacctatttgcccacgccctcctccctgccgctca
ccacccaagtgtgtccagatggagcgtcacgtgatccggccgcctcccatcagccccccg
ccagacagactgcccctggaagacggacagacccacatgatgcacagggaggtgtggatg
gccgtgttcgggcacctcgcacacagagacctttgtgtctgcatgcgcgtctgcaaaacc
tggaacagatggtgctgtgataagaggctgtggacgcggatcgatctgaaccgctgtaag
tccatcactcccctcatgctgagtggcatcatccgcagacagcctgtggctctggacctc
agctggaccaacatctccaagaagcagctcagctggctcatcaacaggctgccaggtctg
cggatgctgctgctctcaggctgctcctgggtggctgtgtctgccctctgcaccgccagc
tgcccgctgctgaggaccctagatgtccagtgggtagaggggctcaaagacgcccagatg
agggacctactctcaccccccacagacaacagaccaggtcagctggacaacaggagtaag
ctgcggaatgtggtggacctgcgtctggccgggctggacatcacagacacctccctgcgc
ctcctcatccgctacacgccccagctgaccaggctggacttgagctactgcaaccacgtc
actgaccagtcggtcaacatcctgaccgcggctgggaccaccaccagagactcgctcact
gacatcaacctctctgtgtgcaacagagtcacggaccagtcgctggcctacttcaagcgc
tgtggaagcatctgtcacattgacttgcgctactgcaagcaggtgaccaaggagggctgt
gagcggttcgttgctgagatgtcagtgagtgtacagtttggacttgtagaggagaaacta
ctgcagaaactctgctag

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