Opisthocomus hoazin (hoatzin): 104326622
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Entry
104326622 CDS
T08436
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oha03036
]
104326622 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
oha03400
]
104326622 (SMCHD1)
Chromosome and associated proteins [BR:
oha03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104326622 (SMCHD1)
DNA repair and recombination proteins [BR:
oha03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104326622 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104326622
NCBI-ProteinID:
XP_009929723
LinkDB
All DBs
Position
Unknown
AA seq
1930 aa
AA seq
DB search
MLISATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSI
QIKLSFDDSQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVP
RSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSG
YIRNRKPSDSTHITSEDERFLHNLILEERDKESFTAVVITGVQPGHMQYLKNCFHLWTRQ
LAHIYHYYIHGPKGNETSAATKELSPFNNIDIQIAMFEKGKVPKIVNLREIKDDMQTLYI
NTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPDDPCFPSKMNDDDGDDDCFIVEKG
ARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTN
KLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGVTT
RTDLPSKRMQSPWTMYAAIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFA
TGGEVQIALEPQALYAEMKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDEL
LPNETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIIS
HISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRSLPSKIFKFTIVEGKP
EKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTDIKPVLEASGLALQYQDITAGTKC
IIKGVTAKGCVNSCQGKNFNLKVTLPGLKEDTQICKIRLQPGPPRQLKVKPDSEILKIEN
GTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNI
KKGQMLKARIEILNCKDVPPVEKIIKLLPSSHVARLQVLSMDGQKAIQIKHQDEINWVAG
DIMHNLIFQMYDEGEREIHITPAVAEKIKVNWTPKINKEQLIQGLLPDVKVPTSVKDVRY
CLITYLDDHVSLESAFTVRPLPDEPKHIKCKLKGPNTLQMGEELQSEIDVMITDQYGNQV
QTVTSACVNSLGVSGPGLDKSNLKITWQESTLTMSVKGIRFKPCLLGSKELCFAWREFSD
FLRVNLTAGSPAKLQFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPTPEPNVKINLT
KGNNLKIVPPTQQHKTDENGRANLGVISIHAPRGEHTLQLKASYNKITLDCPIITFSVLP
DPEKPVRLNVKYDKNAAFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWEALNSGTR
IPIDVTTFSCSKVKDDKEDGFFYFRDKVVPERVGTYSIQFTFAMDKTNILSSDQIIVEVV
PNDPVRLLPDSLPATPAVSNVRTLTSRTLVKDLCLRVTDEYNNHTGIDLVGRIIAKIKSP
NEDDDIEIPQFQGKVSTTEFPFDRGSAKINLVLAENSPGRDSTEYILIFEPDLPALKKPL
EPYCLSFMFYNDFKKQQQMATLTRERDQLSQSIGVYRNWFDTTNQLVTELKCQVKEAETR
ETHLKNELKKHQIELPQTNTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNYPKGNQDILG
KIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTL
PDWNRPLPHLRNGKTFFRPIGNPVFARDLLTFPDNAEHCQTVFGMLLGDTIIIDNLDAAN
HYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSG
QIDLLQQYRAAVVKLDNVNKDLDTHLQSLNTPEMQKKKQELAEQEKSLKLIEQKLGMTPS
GKVTESLLQPIMLDMPDTAIPPKRMRRETVKKLYSSEEWISSPAKKQQQQQQFLQIFPSE
LNGTPRKRKA
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atgctgatttcggcaaccaaggagcgaattgacttcctgccccactatgatacacttgtc
aaaagtgggatgtacgagtactatgccagcgaagggcaaaatcctttgccatttgccctt
gctgagttgattgacaattctctgtcagctacatcccaaaatactggtattcggagcata
cagataaaattgtcatttgatgactcccaaggaaaacccgctgttgctgtgatcgataat
ggaagaggaatgacttctaaacagcttaacaactgggctgtatatagattgtcaaagttt
acaagacaaggtgactttgagagtgatcattcaggatatgtacgccctttgccagtgcct
cgtagtttaaatagtgatatttcatattttggagttggaggcaaacaagcagtgttcttc
gttggacagtctgccagaatgataagcaaacctgcagattctcaggatgttcatgaactt
gtcctatctaaagaagattttgaaaagaaggagaaaaacaaagaagcaatatatagtgga
tacattcgaaacagaaagccatctgactctactcacatcacaagtgaagatgaaagattt
cttcataacctaatattagaagaaagggataaagagagtttcacagcagttgtcattaca
ggtgtacaaccaggtcatatgcagtacttgaaaaactgctttcatctttggacaaggcag
ctggcacatatctatcactattatatccatggaccaaaaggaaatgaaactagtgctgca
acaaaagaactaagccctttcaacaacatcgacattcagattgcaatgttcgaaaaagga
aaagtacctaagattgtcaatcttagggagatcaaagatgacatgcagactttgtatata
aatactgcagcagatagttttgagttcaaggcacatgttgaaggagaaggtatagtggaa
ggcatcatccgatatcatcccttcttgtatgataaagaaacataccctgatgatccatgt
tttccatcaaaaatgaacgatgatgatggtgatgacgactgctttatagtagaaaagggt
gccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaataccatacaca
actgtggaagattttgactggtgtgctcctccaaagaagagaggattggcaccaattgaa
tgctacaacagaatttctggtgccttatttaccaatgataagttccaggtcagcacaaac
aaactcactttcatggatctggagctgaagctaaaagataaaaatactctgttcacgaga
atcttcaatggacaggagcagcgaatgaaaattgacagagaatttgcgttgtggctcaaa
gactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggagtaactaca
cgtactgatttaccatccaaaagaatgcagagcccttggacaatgtatgctgcaatagag
tgggatgggaaaacatacaaaactggacagctggtgaaaactgttaagactcttccaata
ttctatggaagtattgagaaattttttttgtatggagaccatgatggagatatatttgcc
actggaggagaagtgcaaattgctttggaacctcaggcgttgtatgctgaaatgaaaact
attccaatctcaaaacttgacagaacagtgtctgacaaagctgttaaaaaatacatagag
gatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagatgagtta
ctacccaatgaaacaagatttgctggtacaccaataggagcattaagaatagaaattctg
aataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttcaaagaaa
cttcttgttgaactcaaggttattttacattcacctactgggaataaagaaataatttcc
catatcagtcagcatggaggcaaatggccatactggtttaaaaaaatggaaaatcttcag
aaactggggaactacaccttgaaactgcaagtagtgttgaatgaaagtaatgcagacact
tacgcaggaaggtctctaccatctaaaatatttaaatttactattgtagagggcaaacca
gagaaattttcagtgggtcttttggagcttccttttcgagttggagtaccttttaatatt
cctttggaattgcaggatgaatttggtcatgcaacacagttgacaactgacattaaacca
gttcttgaagctagtggattggcattgcagtatcaagacataactgcgggaacaaagtgc
atcattaagggtgtcactgctaaaggctgtgtaaatagttgccaaggcaagaactttaac
ctgaaggttactcttcctggtttgaaagaagacacacaaatctgtaaaatcagattgcag
cctggtcctcctcgtcaattgaaagtaaaaccagattctgaaattctaaagattgaaaat
ggtacagctttcccctttcaggttgaagtactggatgaatcgggaaatataacagcacag
cccaagttgatagttcattgtaagtttttaggtgcttcaaaccttcctgtgtattctgtg
gactgtagtaatgcaggaacaaacattttaactggtccagttatacatgtacagaatatc
aagaaaggccagatgctgaaagcaaggattgaaatacttaattgtaaagatgtgccacca
gtggaaaagattattaaacttcttcctagcagtcatgttgcaagactacaggtcttaagt
atggacggacaaaaagctattcaaattaaacatcaggatgaaattaattgggttgctggc
gatatcatgcacaaccttatatttcagatgtatgatgaaggagaaagggagatacacata
actccagctgtggcagaaaaaatcaaggttaactggacacctaaaattaacaaagaacag
ttgattcagggattattacctgatgtaaaagtgccaacatcagtgaaagatgtacgttac
tgtctaattacttatctggatgaccatgtgtctttggagagtgcattcacagtcagacca
cttcctgatgaacccaaacacattaaatgtaaattaaaaggaccaaacacactgcagatg
ggtgaagaactacaaagtgaaattgatgtaatgattacagatcagtatggaaatcaggtt
cagacagtgacatctgcatgtgtaaattccttgggagtttctgggcctggacttgataaa
tcaaatttgaaaataacttggcaggagagtactctaacaatgagtgtaaaaggtattcga
tttaaaccttgtttacttggaagcaaagaattgtgcttcgcttggcgtgaattttctgac
tttctccgagtaaatttaactgcaggatcccctgctaaattacagtttgtggattggcca
gagttagaaaagcctgttgcagtgataaatggtagagaattgcagaagccccttattgtt
cagctgtgtgatcagtggggaaatccgactcctgaaccgaatgtcaaaatcaaccttaca
aagggtaacaacttaaagattgttcctccaacccagcaacataaaacagatgaaaatggt
agggctaacctgggagttattagtattcatgcacctaggggagagcacactttacagctt
aaagcctcatacaacaagatcacattagactgtcctataatcacattcagtgtcttgcct
gatcccgagaaacctgtccgcttgaatgttaaatatgacaaaaatgctgcttttccagca
ggaggtaccttccctgattttatggttagtgttctttctgaagatgacaacattattaaa
aatattaatccagcacggatttctatgaaaatgtgggaagcgctgaacagcggaactagg
ataccaattgatgttacaacatttagctgtagtaaagtgaaggatgacaaggaagatggc
ttcttctacttcagggataaagtggttccagagagagtgggcacttacagtatccagttt
acctttgcaatggataagacaaatatcctcagcagtgaccagattatagttgaagttgta
cctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtttccaat
gttcgaactcttactagccgtacgctggtcaaggatttgtgcctccgtgtaacggatgaa
tacaataatcacactggaattgatctagttggtagaataatagcaaaaattaagagcccc
aatgaagatgatgacatagagatcccgcagtttcaggggaaagtcagtacaactgagttt
ccatttgacagaggatcagctaaaattaatctggtgctggctgaaaacagtcctggaaga
gatagcactgaatatattctcatatttgagccagatctgccagctttgaaaaaacctttg
gaaccatactgtctgtcatttatgttttacaatgatttcaagaagcagcaacagatggca
acacttacaagggagagagaccaattatctcagtcgataggagtttacagaaattggttt
gatactactaatcagcttgtaactgaattgaaatgtcaggttaaagaagctgaaacaaga
gaaactcacctgaagaacgaactgaaaaaacaccaaattgaattaccacagacaaacaca
cttcagtatgtggattctctgataaaacaaaagatgttggatcaagaaggagtaatgaaa
cagccaaggcgaacttgtacccttccaaactatccaaaaggcaaccaggatattttaggc
aagattgcacatttagctcaaattgaggataacgaagcagcaaaagttatctcttggcat
ttggcaagcgacatggactgtgtagtgacactgactactgaagccgctcgttctattttt
gatgaaactcaaggtcgacaacaagtgttaccgcttgattctatttacaagaagacactc
cctgactggaacaggcctttacctcacttaagaaatggaaagaccttcttcagacctatt
ggaaatcctgtgtttgccagagatctgttaacatttccagataatgcagagcattgtcaa
acagtgtttgggatgctcttgggtgacactatcattatagataacttggatgctgccaac
cattacagaaaggaggttgtaaaaattacacattgcccgactttgctgactagggaagga
gacaggattcgcagcaatggaaaatttggaggccttcagaataaagctcctccaatggac
aaactcagaggaatggtatttggagcacccatgccgaaactttactctactttctctgga
cagatagatcttcttcagcaataccgtgcagcagtggtgaaacttgataatgtgaataag
gaccttgatacacatttgcagtcacttaacactccagaaatgcaaaagaaaaaacaggaa
ctcgctgaacaagagaaaagcctcaagctaatagaacaaaaattgggtatgactccatct
ggtaaagtcactgaatcattacttcagcctataatgttagatatgcctgacaccgccatc
ccccccaaaagaatgcgaagagaaacagtaaaaaaattgtatagctcagaagaatggatc
tcctctcctgcaaagaagcagcagcagcaacagcaatttctgcaaatattcccttcagaa
ctcaatggaactccacgcaagagaaaggcatag
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integrated database retrieval system
