Opisthocomus hoazin (hoatzin): 104339327
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Entry
104339327 CDS
T08436
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104339327 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oha03041
]
104339327 (EFTUD2)
Spliceosome [BR:
oha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104339327 (EFTUD2)
Complex C
U5 SnRNP specific factors
104339327 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
104339327
NCBI-ProteinID:
XP_009943778
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MGDHDEDHPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSL
MEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQD
LCYTDILFTEQERGVGIKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDG
VVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDE
VNGLISMYSTDENLVLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLW
GDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLT
KEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEA
MSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQI
CTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNT
TSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDL
RKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEV
VQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKD
SIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMAT
PRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFE
TDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLS
EDVSISKFFDDPMLLELAKQDVVLNYPM
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgggggaccatgacgaggaccaccctgggatggaggtggtgctgcatgaggacaagaaa
tactatcccaccgccgaggaggtctatgggcccgaagtcgagacgatagtgcaagaggaa
gacacgcagcctctcactgagcctattattaaacctgtgaaaaccaagaagttctctctg
atggaacagacgttaccggtcactgtctatgagatggatttcctggcagatctgatggac
aactcggagctaattcgaaatgtgactctgtgcgggcaccttcaccacggcaagacgtgt
tttgttgactgcctgatagaacagacgcacccagaaatccggaagcgctatgaccaggac
ctttgctacactgatatattgttcacagagcaagagaggggagtagggatcaagagcaca
ccagtgactattgttctgccggacaccaaaggaaagtcttttctcttcaacatcatcgac
actccaggtcacgtcaatttttctgacgaggtgacggctggccttcgtatttcggatggc
gttgtacttttcattgatgcggctgagggggtgatgctgaacacggagaggctgatcaag
cacgcggtgcaggaaaggctggcggtgaccgtgtgcatcaacaagatagatcggctgatc
ctggagctgaaattgcccccgacggatgcgtattacaaactccgacacatcgtggacgaa
gtgaacggtctgatcagcatgtattccaccgatgagaacctcgttctgtctccccttctg
gggaacgtgtgtttctccagttcacagtacagcatctgcttcacgctgggatcttttgca
aagatttatgcagacacatatggagacatcaattaccaggagtttgcaaagcggctttgg
ggtgacatctacttcaacccaaagacccgcaagttcactaaaaaggccccaacgagcagt
tcccagcgcagttttgtggagttcattctggagcccctgtacaagatcttggctcaggtg
gtgggggacgtggacacgaccttgcccaggactctggatgaacttggcatccacctgacc
aaggaggaattgaagttgaacattcggcccctcctgcggctggtctgcaagaagttcttc
ggggaattcacaggctttgtggacatgtgtgtgcagcacatcccctccccgaaggtggga
gccaagacgaagatcgagcatacctacactggtggtgtggactctgacctaggggaggcc
atgagtgaatgcgaccccgacggtccgctgatgtgtcacacgacgaaaatgtacagcacg
gacgacggcgttcagttccacgcctttggcagagtgctcagtggtaccatccacgctggg
cagcctgtgaaggtccttggagaaaactataccctggaagatgaggaggactcccagatc
tgcaccgtcggacgcctctggatctcggttgcaaggtatcacattgaggtaaaccgggtt
cctgctggcaactgggtgctgatagaaggagtggaccagcccatagtgaagactgcaacc
gtcacggagcctcggggcaatgaggaggctcagatcttccgtcctttgaagttcaacacc
acatctgtcatcaaaatagctgtggagccggtcaacccctcggagctccccaaaatgttg
gatggcctccgcaaagtcaacaagagttacccctcgcttactactaaggtggaagagtcg
ggggagcacgtgattctggggacgggggagctctacctggactgcgtgatgcacgatcta
cggaagatgtattcagagattgatatcaaggtcgccgatcccgtggtgacattctgcgag
acggtggtggaaacgtcctccctcaagtgctttgcagagacacccaacaagaagaacaag
atcacaatgattgctgaacctctggagaaggggctcgcagaggacattgaaaatgaagtg
gtccagataacctggaacagaaagaagctgggtgaattcttccagaccaaatacgactgg
gatttgctggctgcccgttccatctgggcctttgggccggacgccactggcccaaacatc
ctagtagacgatacgctgccctcagaggtggacaagtcgctgctgggctctgtgaaggac
agcattgtgcaggggtttcagtgggggaccagggaagggcctctctgcgacgaattgatc
cgcaacgtgaagtttaagatcctggatgctgtgattgctcaggagcccttgcacaggggt
ggaggacagatcatcccgacggcccggagagtggtgtattccgctttcctgatggccacc
cctcgcctgatggagccctactacttcgtggaggtgcaggctcctgccgactgcgtgtct
gcggtgtacacggtgctggccaggcggagaggccacgtgacgcaagatgctccgatcccc
ggctcccctctctacaccatcaaagccttcatcccagccattgattccttcgggtttgag
acagacttgaggacccacacgcagggacaagccttctcgctctcggtcttccaccactgg
cagattgtgcctggtgaccccttggacaagagcatcgtgatccgacccctggagccccag
ccagcgccgcatctggccagggagttcatgatcaagaccaggcgtaggaagggcttgagc
gaggacgtgagcatcagcaagttcttcgatgaccccatgttgctggagctggccaagcaa
gatgttgttctcaactacccaatgtga
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