Oscillibacter hominis: H8790_06120
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Entry
H8790_06120 CDS
T11077
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ohi Oscillibacter hominis
Pathway
ohi03030
DNA replication
ohi03410
Base excision repair
ohi03420
Nucleotide excision repair
ohi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ohi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H8790_06120 (ligA)
03410 Base excision repair
H8790_06120 (ligA)
03420 Nucleotide excision repair
H8790_06120 (ligA)
03430 Mismatch repair
H8790_06120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ohi03032
]
H8790_06120 (ligA)
03400 DNA repair and recombination proteins [BR:
ohi03400
]
H8790_06120 (ligA)
Enzymes [BR:
ohi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H8790_06120 (ligA)
DNA replication proteins [BR:
ohi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H8790_06120 (ligA)
DNA repair and recombination proteins [BR:
ohi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H8790_06120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H8790_06120 (ligA)
MMR (mismatch excision repair)
DNA ligase
H8790_06120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H8790_06120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH
Auto_anti-p27
RUBY_RBDX
IF2_N
L_biotic_typeA
Motif
Other DBs
NCBI-ProteinID:
QNL45573
UniProt:
A0A7G9B7P2
LinkDB
All DBs
Position
1215025..1217001
Genome browser
AA seq
658 aa
AA seq
DB search
MDYREEMKKLRDTLNEHGYRYYVLDDPIIQDYEYDQLLRRLEDLEKDHPEEITPDSPTQR
IGGRTLEGFDTVTHEVPLESLQDVFSPEEVEEFCQRMENQLGSDVEYTVEPKVDGLSVAL
EYRDGAFFRGATRGDGRVGEDVTENLRTIMSIPMTLPEKLPKLIVRGEVYMSRSVFEELN
AVREQNGEPLMANPRNAAAGSLRQLDPKTAAKRRLDIQVFNLQLAEGKEFASHTETLSYL
ESQHFKVIPYRAVSQVPECQQEIVRLNEERLQFPFEIDGAVVKVNSLRARESLGSTSKNP
KWAIAYKYPPEKKPSKVVDITVQVGRTGVLTPKATLEPVHLAGTTVTSASLHNQDYIAEK
DIRIGDTVIVQKAGEIIPEIVEVDFFKRPKGTTPYQFPEVCPVCGAPVFRDTDGAAIRCT
GAECPAQLLQNLTHFASRDAMDIDGLGPAVLQQMIEAKLVSNAADLYDLKAPEIAQLERM
GAKSADNTVAAIEKSKGNDLSRLLYALGIRQVGVKAAKVLSSHFRSYDALAQSTLEELTE
IEDIGAVTAQFILDWVQSPQSKDLIERLKQAGVNMESVNQMVDDRFSGMTFVLTGTLSKF
TRDEAAALIEERGGKSAGSVSKKTTYVVAGESAGSKLKKAQDLGVPVLTEEEFEELLR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggactatcgtgaggaaatgaaaaagctgcgggatacgctgaacgagcatggataccgc
tactatgttttggacgatcccatcatccaggattatgaatacgaccagctgctccggcgg
ctggaggatttggagaaggaccacccggaggaaatcacgccggactctcccacccagcgg
atcggcggccggacgctggagggctttgacaccgtgacccatgaggtgcccctggagagt
ttgcaggatgtgttctctccggaggaggtggaagagttctgccagcggatggagaatcag
ttgggcagcgatgtggaatacacggtagagcccaaggtcgacgggctttccgtggcgctg
gaataccgggacggggcctttttccggggtgccacccggggcgacggccgggtgggggag
gatgtcacggagaacctgcgcaccatcatgtcaattcccatgacgctgccggaaaagctc
ccgaagctgatcgtccggggcgaggtctacatgtcccgcagcgtatttgaggagctcaac
gccgttcgggaacaaaatggggagccgctcatggcaaaccccagaaatgcggccgccggc
tccctgcgccagttagaccccaaaaccgcggcaaagcggcggctggacatccaggttttc
aaccttcagcttgctgaggggaaggaattcgcctcccacaccgaaacgctgtcctacctg
gaaagccagcactttaaggtgatcccctatcgggcggtatcccaggtgcctgaatgccag
caggagatcgtgcggctgaacgaagagcggctccagttcccgtttgaaatcgacggcgct
gtggtcaaggtcaacagcctgagggccagggaatctcttggcagtacgtccaaaaacccc
aagtgggccattgcctacaaatatccgccggagaagaaaccctccaaagtggtggatatt
acagtgcaggtgggccgcacgggtgtgctgacgcccaaggccaccttggagccggtccat
ctggccggaaccaccgttaccagcgcctcgctgcacaaccaggattatattgcggaaaag
gatatccggatcggggatacggtcatcgtgcaaaaggccggcgagatcatcccggagatc
gtggaggtggactttttcaagcgccccaaagggacgacgccctatcagttcccggaggta
tgccccgtctgcggcgctccggttttccgggacactgacggcgccgccatccgctgcacc
ggagcggagtgcccggcccagcttctgcagaacctgacgcactttgcaagccgggacgcc
atggacatcgacggcctggggcccgcagtcctgcagcagatgatcgaggcaaagctggtc
tccaacgccgcagacctctacgacctgaaggcgccagagattgcccagctggagcggatg
ggcgccaaatccgccgacaacacggtggctgccattgaaaaatccaagggcaacgacctc
tctcggctgctttacgccttaggcatccgccaagttggggtgaaggccgcaaaggtgctt
tcctcccacttcagaagctatgacgcccttgcccagtccacgttggaggagctgacggag
atcgaggatatcggagccgtcacggcccagttcatcctggactgggtacagagcccccag
tctaaggatctgatcgaacgtctgaaacaggccggcgtcaatatggaaagcgtcaaccag
atggtggatgaccgcttttccggcatgacgttcgtcctgaccgggacgctgagcaaattc
acccgggacgaagccgccgcgctgatcgaagagcggggcgggaagtccgccggatcggtc
tccaagaagaccacctatgtggtggccggtgagtcggcgggttccaagctgaaaaaagcc
caagacctgggcgttcccgtactgacggaagaggaatttgaagagctgctgcgctga
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