Oceanobacillus iheyensis: OB0760
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Entry
OB0760 CDS
T00093
Name
(GenBank) DNA ligase (polydeoxyribonucleotide synthase[NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03030
DNA replication
oih03410
Base excision repair
oih03420
Nucleotide excision repair
oih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OB0760
03410 Base excision repair
OB0760
03420 Nucleotide excision repair
OB0760
03430 Mismatch repair
OB0760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oih03032
]
OB0760
03400 DNA repair and recombination proteins [BR:
oih03400
]
OB0760
Enzymes [BR:
oih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OB0760
DNA replication proteins [BR:
oih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OB0760
DNA repair and recombination proteins [BR:
oih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OB0760
NER (nucleotide excision repair)
GGR (global genome repair) factors
OB0760
MMR (mismatch excision repair)
DNA ligase
OB0760
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OB0760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
5_3_exonuc
RNA_pol_A_CTD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BAC12716
JAMSTEC:
OB0760
UniProt:
Q8CXK6
LinkDB
All DBs
Position
810517..812520
Genome browser
AA seq
667 aa
AA seq
DB search
MNKEQVSKKIESLIELLNQYGYEYYVLDNPTVPDAEYDQKLRELQQLEQDFPDLVMENSP
TQRVGGAPLASFQKVTHNVPMLSLGNAFNEQDLRDFARRASNGTDQPISFVCELKIDGLA
ISLTYENGKFVRGATRGDGTIGEDITSNLKTIRSIPLSIKEQGTLEVRGEAYMPHKSFLA
LNELREKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGEWENSDLTSHSEHLT
RLKELGFKTNKEWKKCNTIDEVIEYVNYWTEHRNDLSYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEAMTTLRDIELSIGRTGVVTPTAILDPVRVAGTTVQRASLHNEDLI
REQDIRIGDKVVIKKAGDIIPKVVRSVVEQRNGDEQEFHMPDECPACGNELVRLEEEVAL
RCINPNCPAQLMEGLIHFVSRNAMNIDGLGEKVIIQLFQENLVQTMADLYRLDKEELLQL
ERMGEKSVTNLLEAIEKSKENSLERLLFGLGIRFIGSKAAKTLAMEFETMENLQKATYED
VLAIDEIGDKMADSIVQYFAEEKVTELLSNLRELGVQMEYKGPRKSEQATDSVLSGKTVV
LTGKMEKFSRKEAKEIIESLGGTVTGSVSKKTDIVIAGEDAGSKLDKAEKLGIDVWSEQQ
LEDVVGK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaacaagtaagtaagaagatagaatccttaattgaattgttaaatcaatat
ggatatgaatattatgtgttggataatcctacagttcctgatgcggaatacgatcagaaa
ttaagggagttgcaacaattggagcaggactttccagacttagtaatggaaaattcacct
acccagcgtgtaggtggagctccgttagcatcatttcaaaaagtaacccataatgttcct
atgctaagtcttggaaatgcatttaatgaacaagatttacgtgatttcgcaagacgtgct
agtaacggaacagatcaaccaatcagctttgtatgcgagcttaaaatcgatggtcttgct
atttctcttacatatgaaaatggtaagtttgtccgaggagctactcgtggagatggaaca
attggagaagatattacctctaatttaaaaacaatccgcagtatccctttatcgataaaa
gaacaaggaacattagaagtccgcggagaagcatatatgccacataagtcatttcttgca
ttaaatgaactacgtgagaaaaatgaagaggaaccttttgcgaatccgagaaatgctgct
gctggatcattgcgtcaactcgatccaaagattgcggcaaagcggaatttagatattttt
ctatacggtgtaggagaatgggaaaatagcgaccttacatcgcatagtgagcatttaact
cgtttaaaagaattaggatttaagacaaacaaggaatggaaaaaatgtaatacgatagat
gaggttattgaatacgtaaactattggacagaacatcgaaatgacctgtcctatgaaatt
gatggaatagtaatcaaagtagatagtctcgaccagcaggaagaattaggatttacagcg
aaaagcccccgttgggcaattgcttataaatttcctgcagaagaagcgatgacgacccta
agagatattgaattgagtattggaagaacgggtgttgtaacaccaacagcaatattggat
ccagtgcgagtagcaggtacgacagttcagcgtgcttctctacataatgaagatttaatt
cgcgaacaagatatccgtattggtgataaagtagtgataaaaaaagcaggagatattatt
ccaaaagtagtccgttctgtagtcgaacaacgaaacggggatgaacaagaattccatatg
ccggatgagtgtcctgcatgtggcaatgaacttgtcagattggaagaagaagtcgctctt
cggtgtatcaatccgaattgccctgctcaattaatggagggattaatccatttcgtttct
cgtaatgctatgaatattgatgggcttggcgaaaaagtaattattcagttgttccaagag
aatcttgttcaaactatggctgatctttatcgactggataaggaagaactcttacaatta
gaaagaatgggagaaaaatcagttacaaatcttttagaagcaattgagaaatcgaaagaa
aattcattggaacgtcttttattcggattaggaattcgatttataggttcaaaagcagcg
aaaacactggcgatggagtttgagacaatggaaaatcttcaaaaagcaacctatgaagat
gtgttagcgatagatgagattggagataagatggctgattccattgtacaatattttgct
gaagaaaaagttacagaactcttaagcaacttacgggagctaggagttcaaatggaatat
aaaggtccgcgtaaatcggaacaggcaacagatagtgtattgtcaggaaaaacagtggta
cttacaggcaagatggagaagttttctagaaaagaggcaaaagaaataattgaatcattg
ggtggcactgtaacaggaagtgtcagcaagaaaacggatattgttattgctggtgaggat
gctggttcaaaattggataaagcagagaaattaggaattgacgtgtggagtgaacaacag
ctagaagatgttgttgggaagtaa
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