KEGG   Oxyura jamaicensis (ruddy duck): 118169179
Entry
118169179         CDS       T11549                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118169179 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oja03041]
    118169179 (SMNDC1)
Spliceosome [BR:oja03041]
 Complex A
  U2 snRNP components
   U2 related factors
    118169179 (SMNDC1)
 Complex B
    118169179 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    118169179 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR TraX-like
Other DBs
NCBI-GeneID: 118169179
NCBI-ProteinID: XP_035186106
LinkDB
Position
6:complement(join(25508272..25508409,25509091..25509244,25509976..25510137,25511867..25512009,25515236..25515355))
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNAENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSASALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcggaggacctggccaagcagctggccagctacaaggcgcagctgcagcaggtggag
gccgcgctgtcggggaacgcggagaacgaggacctgctcaagctgaagaaggacttgcag
gaagtcatagaattaaccaaagatctcctttcgacacaaccttcagaaactcttgcaagt
tctgacagttctgcttctgctctgcccagccactcatggaaggttggggacagatgtatg
gcaatatggagtgaagatggacagtgttatgaagctgagattgaagaaatagatgaggag
aatggaacagctgcagtcacttttgctgggtatggcaatgctgaagttacaccgctgttc
aacctcaagcctgtggaagagggaagaaaagcaaaagaggacagcggcaacaaacccatg
tccaaaaaagagatgatagcccagcaacgcgagtataaaaagaaaaaagctttgaaaaaa
gctcagagaattaaagaacttgaacaggagcgagaggaccagaaagtcaagtggcaacag
ttcaacaacagagcatattctaaaaacaaaaaaggccaggtaaagaggagtattttcgct
tctccagagagcgtaaccggcaaggttggagttggaacatgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatataatgtcaggcatttgatgcctcagtaa

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