KEGG   Oxyura jamaicensis (ruddy duck): 118172547
Entry
118172547         CDS       T11549                                 
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04115  p53 signaling pathway
oja04210  Apoptosis
oja05164  Influenza A
oja05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oja00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    118172547 (APAF1)
   04115 p53 signaling pathway
    118172547 (APAF1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    118172547 (APAF1)
   05168 Herpes simplex virus 1 infection
    118172547 (APAF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd APAF1_C Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_CAF1B_HIR1 WHD_APAF1 Beta-prop_WDR36-Utp21_1st NB-ARC Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 DSE1_N CFAP251_N WD40_MABP1-WDR62_1st CARD Beta-prop_NOL10_N Beta-prop_TEP1_C NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_WDR41 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_NWD2_C ASA1 CARD_2 eIF2A Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 PEP5_VPS11_N Tricorn_2nd Beta-prop_Nup120_160 WDR54 PAC11 Beta-prop_WDR11_2nd AAA_16 Beta-prop_RSE1_2nd AAA_22 nSTAND6 WHD_Dark DUF2415 LRRC37
Other DBs
NCBI-GeneID: 118172547
NCBI-ProteinID: XP_035192418
LinkDB
Position
1:complement(join(44978451..44978594,44981525..44981671,44982110..44982235,44983034..44983159,44983445..44983564,44985945..44986070,44986398..44986523,44988993..44989112,44989896..44990021,44990771..44990899,44991165..44991323,44992375..44992500,44994577..44994708,44995544..44995669,44997725..44997851,44999622..44999800,45000140..45000253,45001974..45002105,45003190..45003357,45003962..45004200,45004571..45004702,45005233..45005345,45006166..45006349,45007341..45007538,45008827..45009016,45009307..45009444))
AA seq 1248 aa
MDVKSRNYLLMNRQALERDIKTSYIMDHMIADQVLTLQEEEKVKQQNTQKERASMLINII
LTKDNNSYRSFYNALLHEGYRDLAALLQDGIPVFSSGNGKSSLDGMTSYVKTVLCEGGVP
QRPVVFVTRPKLVDAIKQKLYCLGSDPGWVTVYGMAGCGKTVLTAEALRDHQLLEDYFPG
GVHWISVGKQDKAGLLIKLQNLCSRLEHDSTLSQRPPLNIEEAKDRLRLLMLRKYPRSLL
VLDDIWDSWVLKAFDNQCQVLITSRDRSVTDAVSGNKYEIHVESGLAHEKGLEVLSLFVN
MKISELPEQANCIIRECKGSPLVISLIGALLRDFPSRWEYYLKQLQNKQFKRIRKSSSYD
YEALDEAMSISVEQLDNDFKDYYKDLSILPKDVKVPTKVLCILWDMETEEVEDILQEFVN
KSLLFCDRNGKSFHYYLHDLQLDFLTEKNRNQLQELHKNIVNQYKKYYKLNMPIPSQEDC
MYWYNFLAYHMAGANMQKELRELMFSLDWIKAKTELVGPAHLIHEYVEYSSVLDQKDSIV
RENFQEFLSLNGHLLGRQPFPDIIQLGLCQPETSEVYQQAKLRAQSETGAFYLEWINKKS
LKNLSRLVVRPHRDAVYHACFSQDRQRIASCGADKTLQVFKTESGEMLLEITAHEDEILC
CAFSADDKYVATCSADKKVKIWNSRTGKCMHIYEEHTEQVNCCQFNNRSGQYLLATCSND
TFIKLWDLKGKYCRNTMFGHVNSVNHCRFSPNDEYVASCSTDGTVKLWEARSGNELKTID
IKDFFKNSDEQDDVEVLVKCCSWSRNSDMILAVAKNKLLLFDVKTSDLLTQVIVSHHSTI
QYCDFCAGDELVAVALSHCSVELWNIKSLSKVADCRGHMSWVHCVTFSPDGSLFLTSSDD
QTIRIWETNKVCKSSDAVLKSELDAVFHNGEVMILAIYNQKHIQLINGNTDNVIMQTEPQ
ESLICCCCLSEDLKFAAFGQENGTVKVLQLLDGKVLKYREAYRTAVQHCRFTSDCQTLIS
SAHDAVIQVWNWQLNECVFLRGHKEAIKDFRLLENSKLLSWSFDGTVKVWDVITGNTDKD
FACHGGAVLSCAVSPDGSKFSSTSADKTAKIWSFENSCVLHELKGHEACVRCCTFSPNNK
LLATGDDKGDIRIWDILTGRLLHFCSPVTVDEGEPTHGGWVTDLSFSPDSEMLVSSGGYL
KWWNVTTGESLQTFYTNGTNLKSIHVSPDFKVYVTVDNLGILYVLQKL
NT seq 3747 nt   +upstreamnt  +downstreamnt
atggatgtgaagagtagaaattacttacttatgaatcgtcaagctctggagagagacatc
aagacctcttatattatggatcatatgatagctgaccaagtactaacattacaggaggaa
gagaaagtgaaacaacagaacacacagaaggagcgagcatctatgctaataaacattatt
cttacaaaagataataattcatatagatccttttataatgcactacttcatgaagggtac
agagatcttgctgcacttcttcaggatggcattcctgtcttctcctctggtaatggaaag
agttctctggatggaatgacttcttatgttaagacagttctctgtgaaggaggagtacca
caaagaccggttgtgtttgtcactcggccaaaactggtagatgctattaaacagaaactg
tactgcttgggaagtgatccaggctgggtcacagtttatggaatggcaggctgtgggaag
actgttctaacagcagaagctttaagggatcaccagctcttggaagattactttccagga
ggagttcactggatctctgttggaaaacaggacaaagcagggctccttataaaactacaa
aatctctgtagtagattagaacatgactctactctttcacagagaccaccacttaacatt
gaggaggctaaagatcgtcttcgtttgctgatgctacgcaaatatcccaggtctcttttg
gtcctagacgatatttgggattcctgggtattaaaagcatttgataatcaatgtcaagtt
cttatcaccagcagggacaggagtgtaacagatgctgtgtctggcaataaatatgagatt
catgtagaaagtggacttgcacatgagaaaggactggaggttttatccctgtttgtgaat
atgaaaatatcagaactgccagaacaagctaactgcattataagagaatgcaaaggttct
cctcttgtgatatccttgataggtgcattattacgagacttccccagtcgctgggagtac
tatctcaaacagctgcagaacaagcaatttaaaagaataagaaaatcttcgtcttatgat
tatgaagcccttgatgaagcaatgtccataagtgttgagcaactggataatgattttaaa
gactactataaagacctctctattcttccaaaagatgttaaagtacctactaaggtgctc
tgtattctttgggatatggaaactgaagaagttgaagatatactgcaggaatttgttaac
aaatcactattgttctgtgatcgtaatgggaagtcatttcattattatttacatgatctt
caacttgactttcttacagagaagaatcgcaatcagcttcaggagctacataaaaacata
gtcaatcagtacaagaaatattacaagcttaacatgcctattccatctcaagaagattgc
atgtactggtataacttcctagcatatcacatggctggtgccaacatgcagaaggaactc
cgtgagcttatgttttctctagattggattaaagctaaaacagaattggtagggcctgct
catctgattcatgaatatgtggaatatagttcagtcctggatcaaaaggatagcatagta
cgtgagaatttccaggaatttctgtctttaaatgggcaccttcttggacgacagccattt
cctgacattatacagctgggtctttgtcaaccagaaacatcagaggtatatcaacaagcc
aaactacgtgctcagagtgaaacaggagcattttatttggaatggataaataaaaaatcc
ttgaaaaacctttcccgtctggttgttcgtccacatagagatgcggtttaccatgcctgc
ttttctcaggacagacaaagaatagcatcatgtggagctgataaaacacttcaggtattt
aaaacagaaagtggagagatgctgctggaaataactgctcatgaagatgaaatactgtgt
tgcgctttctctgcagatgataagtatgtagcaacttgttcagctgataaaaaagtgaag
atctggaattcaagaacaggcaagtgtatgcacatatatgaagaacacacagagcaggtc
aattgctgccagttcaataacagaagtggtcagtatcttttagccacgtgctcaaatgat
acgttcatcaaactttgggatctgaagggaaagtattgtagaaatacgatgtttggtcat
gtaaattctgtcaatcactgtagattttcgccaaatgatgaatatgttgccagctgctca
acagatggaacagtaaagctttgggaagcacgctcaggaaatgaactgaaaactattgac
ataaaagatttcttcaaaaattcagatgagcaagatgatgtggaggttttagtaaaatgt
tgctcttggtccagaaatagtgacatgattttggccgttgccaaaaataaacttctgctt
tttgatgtcaaaacaagtgatttgttaacacaagtcatcgtaagtcatcacagtacaatc
caatattgtgacttctgtgctggtgatgagttagtagcagttgctttgtctcattgttct
gttgagttatggaatattaaatccttatcaaaagtagcagattgcaggggacacatgagc
tgggttcactgtgtgacattttccccagatggatctctgtttctgacatcctctgatgac
cagacaatacgaatttgggaaacaaacaaggtgtgcaagtcttctgatgctgtgctaaaa
agtgaactagatgctgtatttcacaatggtgaagtgatgattttagcaatttacaatcag
aagcatatacaactcattaatggaaatacagacaatgttattatgcagacagaacctcag
gaatcccttatttgctgttgttgcttaagtgaagatctaaaatttgcagcatttggacag
gagaatggaacagtaaaggtattacagttgttggatgggaaagttctgaaataccgggag
gcctacaggacagctgtgcagcattgtcgatttacctctgactgtcagactctgatttca
agtgctcatgatgcagtcatacaggtatggaattggcagttgaacgaatgtgtgtttcta
agagggcacaaggaagctatcaaggactttagacttctggaaaattcaaaacttctttct
tggtcatttgatggaacagttaaggtttgggatgtcatcactggaaacacagataaagat
tttgcttgccatggaggtgctgttctttcctgtgctgtttcacctgatggtagtaagttt
tcatctacttctgctgacaaaactgcaaagatatggagctttgaaaattcatgtgttctt
catgagctgaaaggtcatgaagcctgtgtgcggtgttgtactttctctcctaataacaaa
ttactagccactggggatgacaaaggagatataaggatttgggacattttaacaggcaga
ttacttcacttctgctccccagttactgtagatgaaggagaaccaacacacggtggctgg
gtaactgacctctcattttctccggacagtgagatgcttgtgtcatctggaggctatctt
aagtggtggaatgtaactactggagaatccttacaaacgttctacacaaatggaactaac
cttaagtcaatacatgtgtcccctgatttcaaagtgtatgtgactgttgataatcttggt
attctttatgtattacagaaattgtga

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