KEGG   Oxyura jamaicensis (ruddy duck): 118173315
Entry
118173315         CDS       T11549                                 
Symbol
LSM3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03018  RNA degradation
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118173315 (LSM3)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    118173315 (LSM3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118173315 (LSM3)
   03041 Spliceosome [BR:oja03041]
    118173315 (LSM3)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     118173315 (LSM3)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     118173315 (LSM3)
Spliceosome [BR:oja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    118173315 (LSM3)
 Complex C
  U2 snRNP components
    118173315 (LSM3)
SSDB
Motif
Pfam: LSM TIG_SUH vATP-synt_E RimP_C
Other DBs
NCBI-GeneID: 118173315
NCBI-ProteinID: XP_035193650
LinkDB
Position
12:join(11749018..11749038,11749890..11750000,11751000..11751095,11751412..11751492)
AA seq 102 aa
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggcggatgaggtggatcagcaacaaacaacaaatactgtagaggagccacttgatctc
atcagactcagtctagatgagcgaatctatgttaaaatgaggaatgacagagaacttaga
ggcagactacacgcatatgatcagcacttaaatatgattctgggtgatgtagaagaaact
gtaacaacaatagaaattgatgaagaaacctatgaagaaatttataaatctaccaaaagg
aatattccgatgctctttgtcagaggtgacggcgttgtgcttgtagctcccccgttgagg
gttggctga

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