Oxyura jamaicensis (ruddy duck): 118174408
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Entry
118174408 CDS
T11549
Symbol
SMCR8
Name
(RefSeq) guanine nucleotide exchange protein SMCR8
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118174408 (SMCR8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oja04131
]
118174408 (SMCR8)
Membrane trafficking [BR:
oja04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
118174408 (SMCR8)
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMCR8_C
Folliculin
Motif
Other DBs
NCBI-GeneID:
118174408
NCBI-ProteinID:
XP_035195609
LinkDB
All DBs
Position
14:complement(2781781..2786833)
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AA seq
928 aa
AA seq
DB search
MIGAPDVVALARQEEEEAAAAGDEAWREPPLPEEYSVPLAPFGGHGANPWARAGGSKFLR
DFILIAEFSEQVGPQPLLTVPDDAKVPGSFDLNYFSLRIMSVDYQASFVGHPPGCAYPKL
NFVEDSKVVLGDSKEGAFAYVHHLTLYDLEARGFVRPFCMAYISADEHKIMQQFQELSAE
FSKASECLKTGNRKAFASELEKKLKDLDYTRSVLHNETEIQKKANDKGYYTTQAIEKANE
LASVEKSIIEHQDLLKQIRSYPYRKLKDSDFHPYEPECAPDQASVGSDQDLAASDLAEPG
EPIPYSHVPSYTPKLIKAKSAKCFDKKLKTLEELCDIYFFTQTLDQLHQIERTFRGDVCY
LLTNQISRALLKQQSVTNFLFEDASLLDEKAPEKRDRGCQELGQDAVDGKGSGESPAPKV
VISLGSYKSSVECVPIKMEQDIDDPPEPAMTEPVTFEHQENLDYLDADIKGSISSGESIE
VLGTERSASGLTKSESQASLPISPSPQVGRSKVGSRRTVSEDSIEVLSTCPSEALIPEDF
KASYPSAINEEPYADDEEGGLRFAPRLNPDDADEREDGSNPENPARVDSACCIGKESPRF
LEPLPSLAHKLCDEDGVVRIPPQPSRQAEPEGGPGGLLPHELDSRYPTGGRELSGTSLDE
CSDSASYISSAASTCSDRTPSPAHPPCPASERHKKKAGQNALRFIRQYPFAHPAIYSLLS
GRTLIVLGEDEAMVKKLVTALSIFVPGCGVHAKPVKHWVAAPLHVVDFQKWKLIGLQRTA
SPAGVNVLHALSRYSRYVSILDADSKTLRCPLYKGAVVARLADHRTQIKRGSTYYMHVQS
VLTQLCSKAFLFTFCHHLHLPIAEREPEEAVASRRVNFLKHHLGLANEDIKIVQYLAELL
KLRYIQEPGRGGNPLLRFDYVPSFLYKI
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcgcccccgacgtggtggcgttggcgaggcaggaggaggaggaggcggcggcg
gcgggcgacgaggcgtggagggagccgccgctgcccgaggagtactcggtgcccctggcg
cccttcggcgggcacggcgccaacccctgggccagggcggggggctccaagttcctgcgg
gacttcatcctcatcgccgagttctcggagcaggtggggccgcagccgctgctcaccgtc
cccgatgacgccaaggtgccgggcagcttcgacctcaattacttctcgctgcgcatcatg
tcggtggactaccaggcgtccttcgtgggccacccgccgggctgcgcctaccccaagctg
aacttcgtggaggactccaaggtggtgctgggcgactcgaaggagggcgccttcgcctac
gtgcaccacctgacgctctacgacctggaggcccgcggcttcgtccggcccttctgcatg
gcctacatctccgccgacgagcacaagatcatgcagcagttccaggagctctcggccgag
ttctccaaagcctccgagtgcctcaagacggggaacaggaaggctttcgccagcgagctg
gagaagaagctgaaggacctcgattacaccaggagcgtgctgcacaacgagaccgagata
cagaagaaagccaacgacaaagggtactacaccacccaagccatcgaaaaggccaacgag
ctggccagcgtggagaagtccatcatcgagcaccaagacctgctgaagcagatccggtcc
tacccctacaggaagctgaaggactccgacttccacccctacgagcccgagtgcgccccg
gaccaggccagcgtgggcagcgatcaggacctggctgcctccgacctcgccgagccgggc
gagcccatcccctactcccacgtgccctcctacacccccaaactcatcaaagccaagtcg
gccaagtgcttcgacaagaagctgaaaacgctggaggagctctgcgatatttattttttc
acccagaccctggaccagctgcatcagatcgagaggacgttcaggggcgacgtgtgctac
ctcctgacaaaccagatcagccgggcgctgctgaagcagcaaagcgtgaccaacttcctc
tttgaagacgcgtctctgctagatgaaaaagcacctgaaaagcgggaccgaggctgccag
gaactcggtcaggatgccgtcgacggaaagggctcgggggagtcccccgcccccaaagtg
gtcatcagcctggggtcctacaagtccagcgtggagtgcgtgcccatcaagatggagcag
gacatcgacgaccctccggagcccgcgatgaccgagcccgtgacttttgagcaccaggag
aacctggactatctcgatgccgacattaaaggcagcatcagcagcggtgagagcatcgag
gttctcggaaccgagagatctgcctcggggctgaccaaatcggagagccaggccagcctg
cccatcagccccagcccccaggtgggcaggagcaaggtgggcagcaggaggaccgtcagc
gaggacagcatcgaggtcctcagcacctgcccctccgaggcgctcatcccggaagacttc
aaagcgagctacccaagtgccattaacgaggaaccttacgctgacgatgaggagggaggc
cttcgcttcgcccccaggttaaacccagacgacgccgacgagcgggaggacggctccaac
ccggaaaacccggcgcgggtcgattctgcctgctgcatcggcaaggagagcccccgcttc
ctcgagcccctgcccagcctggcccacaagctgtgcgacgaggacggggtggtgcggatc
cccccgcagccctcccggcaagccgagcccgagggcgggccgggagggctcctaccccac
gaactcgactcgcgctacccgacgggcggccgggagctcagcgggaccagcctggacgag
tgctcggactcggcgagctacatcagcagcgccgcctccacctgctccgaccgcacgccg
tctcccgctcaccccccgtgcccggcgagcgagaggcacaaaaaaaaggccgggcagaac
gcgctgcgcttcatcaggcagtaccccttcgcccaccccgccatctactccctgctcagc
gggaggaccctgatcgtgctgggcgaggacgaggcgatggtgaagaagctggtgaccgcc
ctctccatcttcgtgcccggctgcggcgttcacgccaagcccgtgaagcactgggtcgcg
gccccgctgcacgtggtggatttccagaagtggaagctgatcgggctccagaggaccgcg
tcccccgcgggggtgaacgtgctgcacgccctgagccgctacagccgctacgtgagcatc
ctggacgccgacagcaagaccctgcgctgccccctctacaaaggcgccgtggtggcccgg
ctggccgaccaccgcacccagatcaagcgaggcagcacctactacatgcacgtccagagc
gtcctcacccagctgtgctccaaagccttcctcttcaccttctgccaccacctgcacctt
cccatcgctgaaagggagccggaggaagccgtcgcgagccgcagggtgaacttcctgaag
caccacctgggcctcgccaacgaggatatcaaaatcgtgcagtatttagccgagctgctg
aagctgcgctacattcaggaacccggccggggggggaaccccctgctcagatttgactat
gttcccagctttttgtacaaaatctag
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