KEGG   Oxyura jamaicensis (ruddy duck): 118178762
Entry
118178762         CDS       T11549                                 
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
  KO
K12852  116 kDa U5 small nuclear ribonucleoprotein component
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118178762 (EFTUD2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oja03041]
    118178762 (EFTUD2)
Spliceosome [BR:oja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    118178762 (EFTUD2)
 Complex C
   U5 SnRNP specific factors
    118178762 (EFTUD2)
SSDB
Motif
Pfam: GTP_EFTU EFTUD2 EFG_C EFG_IV GTP_EFTU_D2 EFG_III EFL1 EF-G_D2 Septin FANCL_d3
Other DBs
NCBI-GeneID: 118178762
NCBI-ProteinID: XP_035203408
LinkDB
Position
27:complement(join(483498..483593,484212..484319,485302..485455,485715..485809,486307..486425,486913..487000,487444..487570,487899..487985,489078..489160,489984..490085,490613..490753,490966..491077,491442..491635,492651..492778,493058..493193,493599..493689,494089..494152,495830..495954,497035..497201,497666..497748,498870..498960,499876..499911,500122..500187,500461..500536,502783..502861,503298..503463,504357..504461))
AA seq 972 aa
MDTDLYDEFGNYIGPELDSDDEDDELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq 2919 nt   +upstreamnt  +downstreamnt
atggacaccgacctgtacgacgagttcgggaactacatcgggccggagctggactcagac
gatgaggacgatgagctgggcagggagtccaaggacctggacgagcttgaggatgatgac
gatgatgatgatatgggggaccacgatgaagaccaccctgggatggaggtggtgctgcac
gaggataagaagtattatcccactgccgaggaggtctatgggcctgaagtagagacgata
gtgcaagaggaagacacgcagcctctcactgagcctattattaaacctgtgaaaaccaaa
aagttctctttgatggaacagacgttaccggtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattcgaaatgtgactctgtgtgggcacctgcaccat
ggcaagacttgttttgttgactgcctgatagaacagacgcacccagaaatccggaagcgc
tacgaccaggatctttgctacactgatatattgttcacagagcaagagaggggagtaggg
atcaagagcacaccagtgactattgttctgccagacaccaaaggaaagtcttttctcttc
aacatcatcgacactccaggtcacgtcaatttttccgatgaggtgacagcaggccttcgt
atctcagatggcgttgtgcttttcattgatgcagctgagggggtgatgctgaatacagag
aggctgatcaagcatgcagtgcaggaaaggctagcagtgactgtgtgcatcaataaaata
gaccgcctgatcctggagctgaaattgccccctacggatgcctattacaaactccggcat
attgtagatgaagttaacggtctgataagcatgtattccaccgatgagaacctcgttctg
tctccccttctggggaacgtgtgtttctccagttcacagtacagcatctgcttcacactg
ggatcttttgcaaagatttatgcagacacatatggagatatcaattaccaagagttcgca
aagcgactttggggtgacatctacttcaacccaaagacacggaagttcactaaaaaggcc
ccaactagcagttcccagcgcagttttgtggagttcattcttgagcccctgtacaagatc
ttggctcaagtggtgggggatgtggacacgaccctgcctaggactctggatgaactcggc
atccacttgaccaaagaggaattgaaattgaacattcgaccactcctgcggcttgtctgc
aagaagttctttggggaattcacaggctttgtggacatgtgcgtgcagcatattccctcc
ccaaaggtgggagccaagacgaaaatcgagcatacctacactggtggcgttgactctgat
ctaggggaagccatgagtgaatgtgaccctgacggtccgctgatgtgtcacacaacgaaa
atgtacagcacagatgatggcgttcagttccatgcctttggcagagtgctcagtggtacc
atccatgctggacagcctgtgaaggtcctaggagaaaactataccctggaagatgaggag
gattcacagatctgcactgttggacgcctctggatctcagtggcaaggtatcacattgag
gtaaaccgtgttcctgctggcaactgggtgctgatagaaggagtggaccagcccatagtg
aagactgcaaccgtcacggagcctcgaggcaatgaggaggctcagatctttcgtcctttg
aagttcaacaccacgtctgtcatcaaaatagctgtagagccagtcaacccctctgagctc
cccaaaatgttagatggtcttcgcaaagtcaacaagagttacccctcgcttactactaag
gtggaagagtcaggggaacatgtgatcctggggacaggggagctctatctggattgtgtg
atgcatgatctacggaagatgtattccgagattgacatcaaggtcgctgatccagttgtg
acgttctgcgagacagtggtggaaacgtcctccctgaagtgctttgctgagacacccaat
aagaagaacaagatcacgatgattgctgagcctctggagaagggacttgcggaggacatt
gaaaatgaagtggtccagataacgtggaacagaaagaaactgggagaattcttccagacc
aaatatgactgggatttgctggccgcacgttccatctgggcctttgggccagacgctact
ggcccaaacatcctcgtagatgatacgctgccctcagaggtggacaaggcactgctgggc
tctgtgaaggacagcatcgtgcagggatttcagtgggggaccagggaagggcccctctgt
gatgaactgatccgtaatgtgaagtttaagattctggatgcagtgattgctcaggagccc
ttgcacagaggcggaggacagatcatcccaacggcacggagagtggtgtattctgctttc
ctgatggccacccctcgcctgatggagccctactacttcgtggaggtgcaggcccctgct
gactgcgtttctgcggtgtacacggtgctggcccggcggaggggccacgtgacacaagat
gctccaatcccaggttcccctctctacaccatcaaagccttcatcccagccattgattcc
tttgggtttgagacagacctgaggacccacacgcagggacaagcgttctcgctgtctgtc
ttccaccactggcagattgtgcccggtgaccccttggacaagagcatcgtcatccgaccc
ctggagccacagccagccccacatctggccagagagttcatgattaagaccaggcgcagg
aagggcttgagcgaggatgtgagcatcagcaagttcttcgatgaccccatgttgctggag
ctggccaagcaagatgttgttctcaactacccaatgtga

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