Oceanobacillus jeddahense: NP439_08070
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Entry
NP439_08070 CDS
T08779
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ojd
Oceanobacillus jeddahense
Pathway
ojd03030
DNA replication
ojd03410
Base excision repair
ojd03420
Nucleotide excision repair
ojd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ojd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP439_08070 (ligA)
03410 Base excision repair
NP439_08070 (ligA)
03420 Nucleotide excision repair
NP439_08070 (ligA)
03430 Mismatch repair
NP439_08070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ojd03032
]
NP439_08070 (ligA)
03400 DNA repair and recombination proteins [BR:
ojd03400
]
NP439_08070 (ligA)
Enzymes [BR:
ojd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NP439_08070 (ligA)
DNA replication proteins [BR:
ojd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NP439_08070 (ligA)
DNA repair and recombination proteins [BR:
ojd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NP439_08070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NP439_08070 (ligA)
MMR (mismatch excision repair)
DNA ligase
NP439_08070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NP439_08070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
zf-NADH-PPase
HHH_3
DUF1877
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
UUI04598
LinkDB
All DBs
Position
1619852..1621861
Genome browser
AA seq
669 aa
AA seq
DB search
MNKQEIKERMDSLVEVLNQYGYSYYVLDNPVVPDSEYDQKLRELENLEEENPEFAREDSP
TQRIGGEPLDAFRKVAHETPMMSLGNAFNEQDLRDFARRASEGVSGEVTFVCELKIDGLA
ISLKYQDGKFVLGSTRGDGRIGEDITSNLRTIRSIPLSIKEAGTLEVRGEAFMPHKSFLA
LNEEREEKEEEPFANPRNAAAGSLRQLDPRIAAKRNLDIFLYGVGEWDNREITSHSERLE
ALHRLGFKTNKEWKKCQSIEEVLDFVAYWTEHRKDLNYEIDGIVVKVDSLDHQDELGFTA
KSPRWAIAYKFPAEEVVTTLTDIELSIGRTGVVTPTAMLEPVRIAGSTVKRASLHNEDLI
REQDIRIGDQVVIKKAGDIIPKVVRSLIEQRTGEEKEFHMPKECPDCGNELVRLEGEVAL
RCINPSCPAQLMEGLIHFVSRNAMNIDGLGEKVIIQLFREDLVHTIADLYRLQKEDLLNL
ERMGEKSVTNLLNAIETSKENSLERLLFGLGIRFIGSKAAQTLAMEFETMEQLQNASFDE
IVAIEEIGEKMADSIVRYFEEEKVTQLLKELKALGVNMSYTGQKKSEMTTDSLFSGKTIV
LTGKMEQYTRKEAKELIESLGGTVTGSVSKKTDIVIAGADAGSKLEKAEKLDIEVWSETE
LKEATEREE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacaagaaatcaaagaacgtatggactctttagtagaagtcctgaatcaatat
ggttattcctattatgtattggacaacccggttgtgcctgattccgaatatgatcagaag
ttacgggagctggaaaatttagaagaggaaaatcctgaattcgccagagaggattctcct
acacagcgtattggcggtgaaccacttgatgctttccgcaaggttgctcatgaaacgcca
atgatgagtcttgggaatgcgtttaatgaacaagatttaagagactttgccagacgggca
tcagagggtgtttccggcgaagttacgtttgtatgtgaactgaaaatagatgggttagca
atttccctaaaatatcaggacggtaaatttgttctgggctcaacgcgtggtgacggaaga
attggtgaagatattacatctaatttacgcaccatacgcagtatcccgttaagcatcaaa
gaagctggtactttagaagtgcgtggggaagcctttatgccgcataagtcctttttagcc
ctaaatgaagagcgggaagaaaaagaagaagaaccttttgccaatccaagaaatgcagca
gctggttcattacgacagcttgatccaagaatagcagcaaaacgtaatttagatattttt
ctatatggcgtcggggaatgggataatcgtgagataaccagccatagtgagcgtttagaa
gctttgcatcgtctgggttttaaaacaaataaagaatggaaaaaatgtcaaagcattgaa
gaagtgctggactttgttgcctactggaccgaacatcgcaaggatttaaattatgaaata
gatggtattgtagtcaaagtagatagccttgatcaccaggatgagctaggttttacggcg
aaaagtccacgttgggcaattgcttataaatttccggcagaagaagtggtaacgacatta
acggacattgaattaagcattggtagaacaggggtagtaacacctacagccatgcttgaa
cccgttcgaatagctgggtctaccgtgaagcgggcctctctgcataatgaagatttaatt
cgggagcaggatatacggattggtgatcaggtagttattaagaaagctggagatattatt
ccaaaggttgttcgctcactgattgaacagcggactggagaagaaaaagaattccatatg
ccaaaggagtgtccggactgtggcaatgaattagttcgtttagagggagaggtagcttta
cgctgtattaacccaagttgtccagcccaattgatggagggtttaattcattttgtgtcc
aggaatgctatgaatattgacggtttaggagaaaaagtcattattcagcttttccgtgaa
gacttggttcatacgattgctgatttatatcgattacaaaaagaagacctcttgaattta
gaacggatgggtgagaagtctgttactaaccttttaaatgcaatagaaacttctaaagaa
aattcattggaacgattgttatttggacttggcatccgttttattggatcaaaagcagca
caaacgttagcaatggaatttgaaactatggaacagcttcaaaatgccagctttgatgaa
atcgtcgctattgaagaaattggggagaaaatggcagattccattgtccgctactttgaa
gaagagaaagtgacacagctattgaaggaattaaaagcgttaggtgtcaatatgagctac
actggtcagaagaaatcagaaatgacaacagatagcttattctctggaaaaacaattgta
ctgactggtaaaatggagcagtatacgagaaaagaagcgaaagaactaattgaatcgtta
ggtggaacagtgactggcagtgtaagtaaaaaaacagatatcgttattgccggggcagat
gctggttcaaagctggaaaaagcagaaaaactggatatagaagtatggagcgaaacagag
ttaaaagaagcgaccgagagagaggagtga
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