Oncorhynchus keta (chum salmon): 118361101
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Entry
118361101 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 1 protein-like
KO
K06838
slit 1
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118361101
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Axon guidance molecules
118361101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRR_9
EGF_TEN
LRRCT
LRR_1
LRRNT
LRR_14
EGF_Teneurin
LRR_EndoS
EGF_DL_JAG
EGF_3
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
118361101
NCBI-ProteinID:
XP_052330314
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All DBs
Position
2:25474164..25585867
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AA seq
1415 aa
AA seq
DB search
MCISLEVGYSIFDLTLSCCCVHRDLSENNIQSIPRKAFRGATDIKNLQLDKNHIGCIEDG
AFRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLHCDCHLSWLAQWLRQRPT
IGLFTQCTAPAPLRGLNVAEIQKHEFTCSGHSESSGLQPCSQGGGSCPAMCTCSNNIVDC
RGKGLTAIPANLPDTMAEIRLEQNGIKSVPPGTFSPYKKLRRIDLSNNQISEIAPDAFQG
LRSLNSLVLYGNKITELPKGVFDGLYALQLLLLNANKIHCVRANAFTDLQNXSLLSLYDN
KIQTVAKGTFASLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANK
RIGQIKSKKFRCSAKEQYFIPGTEDVRLNNECNSDPVCPPKCRCESNVVDCSNLRLNKIP
EHIPSSTTELRLNNNDISTLEAVGVFKTLSQLKKINLSNNKITEIEDGVFEGAGSVNELH
LTANQLDSVRSGMFKGLEGLRMLMLRNNKISCIHNNSFTGLYNVRLLSLYDNQLTTITPG
AFDTLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVAVP
DFRCEEGVEETSCVPRPQCPSECTCLETVVRCSNKHLRTLPKGIPRNVTELYLDGNQFSV
VPKELSTFKYLQLVDLSNNKINSLTNSSFSNMSQLTTLILSYNSLRCIPSLAFGGLRSLR
LLSLHGNEISELPDGIFSDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAG
PTGMEGKLLLTTPAKKFECHGEVDSGVLAKCSPCLSSPCVNQGICHSDLVEIYRCSCPPG
FKGRNCETALNVCVSNPCANGGTCQLNEEEEAYSCACPLGFEGPTCQTNMDDCEDNDCEN
GANCIDGVNNYTCLCPPYYTGEMCEEMEDVCAPGVSPCQHQSTCLISSTGPQCVCSPGYV
GDDCSVDYDDCEENRCQNGAQCVDQLNAYSCSCPDGYSGQLCEVPSSPRSLCDLADCQND
APCVERAGRALCQCLPGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAED
NGILLYNGDNDHIAVELFQGHVKVSYDPGSLPGHAIYSTETINDGQFHTVELVTIDQMVN
LSIDGGLPTTMDSLRGVRPLNGEAPLYVGGMPVDVHSAAFRLWQIQNGSSFHGCIQNLYI
NNELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQPDGAQGPVCHCQPGWNGPHCDQPATN
PCQGSKCVHGKCIPLDLQSYRCECVEGYRGALCNQQGELFNPCRSHNCKHGRCQISDTGE
AYCHCEAGYTGELCDAESECRGEPVRDFYQVQRGYTICQTTRMVSWVECSGACDTGACCA
SQRMKRRKYTFECSDGTSFSEEVEKTIKCGCVGCM
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgtgtattagcttagaagttgggtacagtatctttgatctaacattgtcatgttgttgt
gttcacagagatctgagtgagaacaacatccagtccatccccaggaaggctttcagagga
gcgacagacatcaagaaccttcagttggataagaaccacattggctgcatcgaggacgga
gccttcagagcactgaggggcctggaagtactgactctgaacaacaacaacatcagcagc
atcccagtctccagcttcaaccacatgccaaaactacgtaccttccgtctacactccaac
aatctgcactgtgactgtcacctctcctggttggcccagtggttaagacaaaggcctaca
attggtctgttcactcagtgtacagctccagccccgcttagaggactcaacgtggccgag
atacagaaacatgagtttacctgctcaggtcactcagagagctccggcttgcagccctgc
agccaaggaggaggttcgtgccctgctatgtgtacctgtagtaacaatattgtggactgc
agaggaaaaggcctcacagctatacctgccaaccttcctgacaccatggctgagattcgt
ctggagcagaatgggatcaagtcagttcctcctggaaccttctctccctacaagaagctg
cgcaggatagatctcagtaataaccaaatatcagaaatagctcctgatgccttccagggc
ctgagatccctcaactcactagtcctatatgggaataagatcacggagctgcccaaagga
gtgttcgacggactatatgccctgcaactactgttgttgaatgccaataagatccactgt
gttcgggccaatgcattcacagacctgcagaatnnctctctactgtctctgtatgacaac
aagatacagactgtggccaagggcaccttcgcatccctcagagctatacagacgcttcac
ctggcccagaacccgtttatctgtgactgtaacctgaagtggctggcagactaccttcgc
tccaacccaatagagaccagcggtgcacgctgtgccagccccagacgactggccaacaaa
cgcatcgggcagatcaagagcaagaagttccgctgctctgccaaggaacaatacttcatc
cctggcaccgaggacgtccgtttgaataatgagtgtaacagtgatccagtctgtcctcct
aaatgccgctgtgagtccaacgtggtggactgctccaacctacgcctcaataagatacca
gaacacatcccttcctctaccactgaacttcgtctgaacaacaatgatatcagcacactg
gaggctgtaggggtcttcaagaccctctctcagctcaaaaagattaaccttagcaacaat
aagatcacagagatcgaagatggggtgttcgagggggcggggtcagtcaatgagctccac
ctcacagccaatcagctggactctgtccgcagtggaatgttcaagggactggagggacta
cgcatgctaatgttgaggaacaacaagatcagctgtatccataacaacagcttcactggc
ttgtacaacgttcgcctgctgtctctctatgacaaccagctaactaccatcacccctgga
gccttcgacaccctgcaaacactgtctacacttaacctccttgctaactccttcaactgt
gactgtcgtctggcctggcttggtgattggctgagaagcaggaagatcgtcacgggcaac
cctcgatgccagcgccccgccttcctaaaggagatcccactacaggacgtggcagtgcct
gacttccgctgtgaagagggtgtggaggagacgagctgtgtgcccaggcctcagtgtccc
agtgagtgtacttgtttggagaccgtggtacgctgcagtaacaaacacctccgtacattg
cccaaaggcatccccagaaacgtcaccgagctgtatctagacgggaaccagttcagtgtg
gtgccaaaggaactgtctaccttcaaatacctccagttagtagacctgagtaacaacaag
atcaactctctaaccaactcttcattctccaacatgagtcagctcaccacactgatcctg
agttacaactctctgcgctgcatccccagtctggcctttggtggactacgttcccttcga
ctactgtctctccatggcaacgagatctctgagcttcctgacggcatcttcagtgacgtg
gcctctctgtctcacctggcaattggtgctaaccctctgtactgtgactgccgtctacgc
tggctgtctgattgggtgaagacgggatacaaggagcctggcatcgcccgctgtgccgga
ccgacgggcatggagggcaagctgctgctcaccacccctgccaagaagtttgagtgccat
ggtgaggtggacagtggcgtcctggccaagtgtagcccgtgtctgtccagtccgtgtgtc
aaccaggggatctgtcacagtgatctggtggagatttacaggtgcagctgtcctcctgga
ttcaagggtaggaactgtgagactgctctgaacgtctgtgtcagtaacccctgtgccaat
gggggcacctgccaactaaacgaggaggaggaggcatacagctgtgcctgtccccttgga
tttgaaggtcctacctgccagaccaacatggatgactgtgaagataacgactgtgaaaac
ggagctaactgtatagatggtgtcaacaactatacctgcctctgtcctccttactacacc
ggggagatgtgtgaggagatggaggatgtgtgtgctccaggtgtcagtccgtgtcaacac
cagtctacctgtctcatcagctctactggacctcagtgtgtgtgttctccgggctacgtt
ggtgatgactgcagtgtggactatgatgactgtgaggagaatcgctgtcagaacggagct
cagtgtgtcgaccaactcaacgcatactcctgctcctgccccgatggctacagtggtcag
ttgtgtgaggtgccctcctcaccgcgatctctatgtgacctggcagactgccagaacgat
gccccgtgtgtggagcgggcaggccgggcactgtgccagtgtctccctgggttcggaggt
cctcgctgtgagaagctggtcagtgtgaacttcgtagacagagactcctacctgctgctc
tctgacctcaagaactggccccaggctaacatcacactgcaggtgtcgacagcagaggac
aacggtatcctgctgtataatggggacaacgaccacatcgccgtagagctgttccagggt
cacgttaaggtcagctacgaccctggcagcctgcctggacatgctatctacagtactgag
acgatcaacgacggtcagttccacacggtggagctggtgaccattgaccagatggtgaac
ctgtccatcgacgggggtctccccaccaccatggacagcctgaggggggtccggcccctc
aacggggaggctccgctatacgtggggggtatgcccgtggacgtccactcggcagccttc
cggctctggcagatccagaatggctccagtttccacggctgcatccagaatctgtatatt
aacaatgagctgcaggacttcactaagacccagatgaagccgggcgtggtgccaggctgt
gaaccttgtaggaagatctactgcctacatggtatctgccagccggacggggcacaggga
ccagtctgccactgccagccgggctggaacggaccacactgtgaccagccggccaccaac
ccatgccagggcagcaagtgtgtgcatggcaagtgtattcccctggacctgcagtcgtac
cgctgtgagtgtgtggagggttaccgtggtgccctgtgtaaccagcagggggagctgttt
aacccctgccgcagccacaactgtaaacacgggcgctgccagatctctgatacaggagag
gcctactgccactgtgaggccggatacaccggagagctctgtgatgcagagtcagagtgt
cggggggagcccgtgagggacttctaccaggtgcagcgtgggtacaccatctgtcagacc
acacgcatggtctcctgggtagagtgctccggcgcctgcgacacaggtgcctgctgtgcc
agccagcgaatgaaacgccggaaatacacctttgagtgcagcgatggaacctcgttcagc
gaggaagtggagaagaccatcaagtgtggctgcgtgggctgcatgtag
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