Oncorhynchus keta (chum salmon): 118361335
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Entry
118361335 CDS
T09424
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1-like
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
118361335
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oke04990
]
118361335
Domain-containing proteins not elsewhere classified [BR:
oke04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
118361335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
EGF_3
hEGF
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
118361335
NCBI-ProteinID:
XP_052332872
LinkDB
All DBs
Position
2:complement(41904472..42044224)
Genome browser
AA seq
1721 aa
AA seq
DB search
MAWIRWDLFFSIGLFISPAFVSTDQSGFRRYYVLQPGPSGTDRVHVSSISSRSGATGQPH
AYNVELSASYSGQVRTRRMGNQANPIPLRQDTQFTQHQQVIRRTSHNVQQSRQMKMSGVN
VCGGQCCHGWSKASGSQQCTKPNCLPQCQNGGMCLRPQLCVCKSGSKGKACEQNTMPTSS
YPAQPGNGHTKGHSNGHTKGHNVVPQRPIPQQGYIPGPVPVSNMAQMTLTVKQSPHLVRP
QQIQPGSQQFVRKPKYYHTQTTHTQTHVQHQPDRPIPLTVGHNPIHVGNHTGRIKVVFTP
TICKVTCTGGRCQNNCELGNTTTIVSENGHAADTLTAPNFRVVVCHLPCMNGGKCSARDK
CQCPPTFTGKFCQMPVQNGNGQQRQNGQQQTSQIHSTHTLPLTFSNGQNPVKYAPSIVNI
HVKHPPEASVQIHQVSQLDANGQKVKGNGQNGHSQTQSHYTYHHSESSQKIQQQGHNIIY
PNLQSYVPQYQPVSNSQLGRCFQETTGTQCGKALPGLSKQEECCQSIGTSWGFHKCQKCP
KPSIPLTAGGSRQAMDCPQGYKRINNSHCQDLNECQLQGVCPNGDCLNTMGSYRCSCKAG
FIPDPTLSTCIPDTPAVHEEKGACFRLVSSGKQCLHPVPAQLSKQLCCCSVGKAWGPRCD
KCPLPGTAKFKEICPGGMGYTVTGSYKPKLPNQLPKLPSQPETINKPMITHQEPVAPPLP
FPTPEKPVEALSVTERQLPSIPVATDAPEQELVILEATSNRPVVEVEAGQPQLSPGVSTM
RMEPAYPEVVEKTSPPAPALILPSNAGQDIAPTQSAEVDECQVNPHICGQGICYNTVEGY
TCICREGYQMDETHTTCVDVDECLESASLCSNGRCRNTPGSFLCVCQPGFMTDEEGTSCI
DLNECLNSHACPEDGFCVNNVGSYICRHCDGGFRMSPTGQCEDIDECLDMGVCPSGMCIN
LLGSYECDSCPEGFQGQGGQCVDVDECLHQSTCANGKCSNFEGYFVCSCNDGFTLSLDGQ
SCEDEDECQDEQVCTRGHCQNTVGSYLCNCGPGFRASPAGDQCDDVDECQELTMPCDSVG
QCVNNMGSYHCSCPQGYQQINGTSCLDVDECLDDPELCSPHGECLNAEGSFYCVCERGFA
AGQDTHTCEDMDECSDDTRCVGGSCENSQGSYRCQCDTGYRLQPDTDTCLDIDECAEMGQ
SICGAWLCENTEGSYRCVVDCPPGHDRGPEGICVDIDECNVNATVCGNHGFCENTVGSFR
CLCDRGYQESQEGLGCVDVNECELLSGVCGEALCENVEGSFLCMCSDEDQEYNQMTAKCS
PAPTASSVERKECYYNLNDENLCENVLTSSVTMEECCCTLGAGWGDNCEVHPCPVQGTDQ
FSQMCPAGRGNVPTGDAVFGVTAAESYKDADECALFGQEICKDGFCLNSPGSYECYCKTG
LYYDEVKLQCRDIDECQDESSCVGGECLNTQGSYMCFCTRPMVLDSDNKRCVIAPEVAEQ
HSVQTDYQGICWQTVTGTRKTCTKPLANRKTTFTECCCLHGEAWGMDCALCPLKNTEDYA
SMCNVPCLRQGRPYGRDALVADPIQEYEVNLDYEPRPDQPGALPLYEDEEIAYDAFEGLR
AEECGILNGCENGRCVRVQEGYTCDCFDGYTLDMSRMACVDVNECSELNNRMSLCKNAKC
INTEGSYKCVCLPGYTPSERPNYCVAREQGGAAAASRTERE
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atggcttggatcagatgggacctattcttttctataggtttattcatttcaccggcattt
gtctccacggatcagagtggctttaggagatactacgtgttgcagccaggaccgagcggg
acggacagagtacatgtgagttccatctcttcgcgctccggtgccactggacagccccat
gcctacaatgtggagctctcggccagttacagtggccaggtccgaacccgtaggatgggt
aaccaagcgaacccgatcccgcttcgccaggacacacagtttacgcagcatcagcaagtc
attcggcgcaccagccacaacgttcaacagagtcgccaaatgaaaatgtcaggggtgaat
gtctgtggagggcagtgctgtcatggatggagtaaggcctctggatcgcagcagtgcaca
aagcccaactgtctgccccagtgccagaatggaggaatgtgtctgaggccccagctctgt
gtctgcaaatcgggctccaagggcaaggcatgtgaacagaacaccatgcccacctcctcc
tacccagcacagccagggaacggccacaccaagggacacagcaatgggcacaccaaggga
cacaacgtagtgccccagcggcccatcccccagcagggttatattcctgggccagtccct
gtcagcaacatggcccagatgaccctgactgtcaagcaatccccccacctggtccggccc
cagcaaatccagcctggtagccagcagtttgtccggaagcccaagtactaccacacacaa
accacacacacacagacacatgtccagcatcagcctgacagacccattcccctgacagtg
ggacacaaccccatccacgtggggaaccacacgggacggatcaaggtggtcttcacaccc
accatctgcaaagtgacctgcacaggggggcggtgccagaacaactgtgagctgggcaac
accaccaccatcgtcagtgagaacggccatgccgcagacaccctcactgcccccaacttc
agagtagtggtatgccatcttccctgcatgaatggtggaaagtgcagtgccagggacaag
tgtcagtgcccgcctaccttcacagggaagttctgtcagatgcctgttcagaacgggaat
gggcagcagcgccagaatggacagcagcagacgtcccagattcactccactcacactctg
ccgctcaccttcagcaatggacagaaccctgtgaaatatgcccccagcatcgtgaacatc
catgtgaagcatcccccagaggcctcggtgcagatccaccaggtctcccagctggatgcc
aatgggcagaaggtgaaaggcaatgggcagaatggccactcccagacccagtcccactac
acctaccaccactcagagagcagccagaagatccagcagcagggacacaacatcatctac
cccaacctgcagagctacgtaccccagtaccagcctgtctccaacagccagctgggacgc
tgcttccaagagaccaccggcacacagtgtggcaaggccctccctggtctcagcaagcag
gaggaatgctgtcagagcatcggaacatcctgggggttccacaaatgccagaagtgccca
aaaccatctattcctctgacagctggaggatccagacaggcgatggactgcccccaggga
tacaagcgcatcaacaactcccactgccaagatcttaatgagtgccagctgcagggcgtg
tgtcccaacggagactgtctgaacaccatgggtagctacaggtgcagctgtaaggccggc
ttcatccctgaccccaccctctccacctgtatccctgacacccctgccgtccacgaggag
aaaggggcttgtttccgattggtcagttcggggaagcagtgtttgcacccggtgcctgct
cagctgagcaaacagctgtgctgctgcagtgtgggcaaggcctggggcccgcgctgcgac
aagtgccccctgccaggaacagctaaattcaaggagatatgccctggtgggatgggctac
actgtcacaggctcttacaagcccaaactacccaatcaactacccaaacttcccagccaa
cctgagaccatcaacaagccaatgatcacccaccaagagcctgtggccccgcctctgccc
ttcccgacacccgagaaaccagtggaggccttgagcgtcactgagagacagcttccctcc
attccagttgccacagatgcacctgagcaggagctggttattctggaggctactagtaat
aggccagtagttgaggtcgaggctggccagccacagctctctcccggtgtctctaccatg
aggatggagccggcctacccagaggttgtggagaaaacgtccccccctgctccagccctg
atcctcccctccaacgctggccaggacatcgccccgactcagtcagcagaggtggatgag
tgccaggtcaaccctcacatctgtggccaggggatctgctacaacactgtggagggttat
acctgcatctgtagagagggctaccagatggatgagacacacaccacctgtgtcgatgtt
gatgaatgcctggagtctgcatcactgtgctccaacggccgctgcaggaacactcctggc
agcttcctgtgtgtgtgccaaccaggcttcatgacagatgaggagggaaccagttgcatt
gatttaaacgagtgtctgaactcccacgcttgtcctgaggatggcttttgtgtcaacaat
gtgggttcctacatctgtcggcactgtgacggcggcttcaggatgagcccaacaggccag
tgtgaagatatagatgagtgtctggacatgggtgtgtgtccatccggcatgtgcatcaac
ttgctgggctcttatgagtgtgattcgtgtccagagggcttccagggccagggaggacag
tgtgtcgatgtagatgaatgcctgcaccagtcaacttgtgccaatgggaagtgctccaac
tttgagggatattttgtctgctcgtgtaacgatggattcacgctcagcctagatggacaa
tcatgtgaagatgaggatgagtgccaggatgagcaggtgtgtaccagggggcactgccag
aacactgtgggttcttacctgtgtaactgtgggccgggctttagggcctccccggcgggg
gaccagtgtgacgatgtggatgagtgccaggagctgaccatgccctgtgacagtgtgggc
cagtgtgtcaacaacatgggctcctaccactgcagctgcccccagggctaccagcagatc
aacggcaccagctgcctagatgttgacgagtgtctggacgacccggagctgtgttcccca
cacggggagtgtctcaacgccgagggctccttctactgtgtctgtgagagaggcttcgct
gcaggccaggacacacacacctgtgaagatatggatgagtgctcggatgacaccaggtgt
gttggcggctcctgtgagaacagccagggttcctacagatgccagtgtgacactggctac
cgcctgcagccagacactgacacatgcctggatatcgatgagtgtgcagagatgggccag
agtatctgtggggcgtggctctgtgagaacacagagggctcctataggtgtgtggtggac
tgcccccccggacacgaccgtggcccagaaggcatctgtgttgatattgatgagtgcaac
gtcaacgccacggtgtgtggtaaccacggcttctgtgagaacacggtcggttccttccgc
tgcctgtgtgaccggggctaccaggagtcccaggagggcctcggctgcgtggatgtgaat
gagtgtgaattgctgagcggtgtgtgtggcgaggccctgtgtgagaacgtggagggctcg
ttcctgtgtatgtgttccgacgaggaccaggagtacaaccagatgaccgccaagtgcagt
cccgctcccacagcctcgtcagtagagaggaaggagtgttactacaacctcaatgatgag
aacctgtgtgagaacgtgctgaccagtagtgtcaccatggaggagtgctgctgtacgctg
ggggcaggctggggggacaactgtgaggtgcacccctgccccgtccagggcactgatcag
ttttcccagatgtgtccagctgggagaggcaatgtacccactggtgacgctgtgttcgga
gtgaccgcagccgagagttataaagatgcagatgaatgtgcgttgtttggccaggagatc
tgtaaggatggtttctgcctcaacagcccagggagctacgagtgttactgtaagactggc
ctgtactacgacgaggtcaagctgcagtgcagagacatcgatgagtgtcaggatgagtcg
agctgtgtggggggagagtgtttgaacacacagggctcctacatgtgtttctgtacccgc
cccatggtgttggactctgacaacaagcgctgcgtgatcgcccctgaagtggctgagcaa
cactcggtgcagactgactaccagggtatttgctggcagacggtaacgggcacccggaag
acttgcaccaagcccctagccaacagaaagaccaccttcacagagtgctgctgtctgcat
ggagaggcctggggcatggactgtgccctttgccccctgaagaacacagaggactatgcc
tccatgtgtaacgtgccatgtctcagacaggggcgtccgtatggtcgcgatgcccttgtg
gctgatcccatccaggagtatgaggtcaacttggactatgaacctcgccccgaccagcct
ggtgccctgcccctgtacgaggatgaggagatcgcgtacgacgcgtttgagggcctgaga
gcggaagagtgtggcattctgaacggctgtgagaacgggcgctgcgtgcgggtacaggag
ggctacacctgcgactgctttgacgggtacaccctggatatgtcccgcatggcgtgtgtg
gatgtgaatgaatgttccgagctcaacaaccggatgtccctctgcaagaacgccaaatgt
atcaacacggaaggatcctacaagtgtgtgtgcctgccaggatacaccccctctgagcgg
cctaactactgcgtggccagggaacaaggaggagcagcagcagcatcgcgcacagagagg
gagtga
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