Oncorhynchus keta (chum salmon): 118365243
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Entry
118365243 CDS
T09424
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118365243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118365243
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118365243
Complex C
U5 SnRNP specific factors
118365243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
118365243
NCBI-ProteinID:
XP_035603194
LinkDB
All DBs
Position
32:complement(20010815..20029094)
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AA seq
970 aa
AA seq
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METDLYDEFGNYIGPELDSDEDDDLEADDRDVDEADEDDEDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTSGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGDINYTEFAKRLWGDIYFNPKTRKFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggacctgtatgacgagtttgggaactacattgggccagaactagactctgac
gaggatgatgatctggaggcagatgacagagatgtggatgaggctgatgaggatgatgag
gatgagccggctgatgctgatgaagatgtccctggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctaatccgtaacgtcaccctgtgtggccacctgcatcacggcaag
acatgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagacgac
atggatctccgttacacagacatcctcttcactgagcaggagcgaggggttggtatcaag
agcacccccgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggtcacgtcaacttttcggatgaggtgacctcaggcatccgactctcc
gacggcatcgtgcttttcatcgacgcagcagaaggagtgatgttgaacaccgagcgtctg
atcaagcacgcagtccaggagcgtctggccatcaccatctgcatcaacaaggtggaccgc
ctcatcgtggagctcaagctgccccctacagacgcctactacaaactacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagatgagaacctggtggtgtctcct
ctcttggggaacgtgtgtttcgccagctctcagtactgcgtttgcttcaccctgggctcc
ttcgccaagatctactctgacacctatggtgacatcaactacacagagtttgccaagagg
ctgtggggagacatttacttcaaccccaaaacgcgcaagttcaccaagaaagcccccacc
agtaactcccagcgtagctttgtggagtttgtgctggagcctctgtacaagatcctatcc
caggtggtgggtgactgtgacacgtctctgcctcgggtgctagatgagctgggcatccac
ctggtcaaagaggagctgaagctcaacatcagacctctactcaggctggtctgtaagcgc
ttctttggagagttcaccggcttcgtggacatgtgcgtgcagcacatcccctcaccacag
gggggcgccaagaacaagatagagcacagctacactggaggactggactcagacctgggg
gaggccatggcagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccacgcgtttggccgggtgctgagcggtaccatccag
gcgggccagccagtcaaggtgctgggcgagaactacactctggaggacgaggaggactcg
caggtctgcacggtgggacgtctctggatcaacgtcgcaaggtaccagatagaggtgaac
cgtgtgcctgctggcaactgggttctcattgagggctgtgaccagcccatcgtcaagaca
gccaccatcaccgagcccagagggaacgaggaggcccagatcttccggccgctcaagttc
aacacggcgtctgtcatcaagatcgctgtggagccagtcaacccgtcagagctgcccaag
atgttggacggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggag
gagtcaggggaacatgttatcctgggtaccggggaactctacctggactgtgtcatgcac
gacctgcggaagatgtactctgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagacggtagtggagacgtcgtctctcaagtgctttgccgagacgccgaacaagaag
aataagatcaccatgattgccgagcctctggaaaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaagctgggagagtttttccagaccaagtat
gactgggatctgctggctgccaggtctatctgggcctttgggcccgacaccaccgggcct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggtt
aaggacagcatcgtccagggcttccaatggggcaccagggaggggcctctgtgtgacgaa
cctatcagaaacgtgaagtttaagattctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtgacgcaggacgccccc
atccccgggtctcccctctacacaatcaaggccttcatcccggccatcgactcgtttggc
ttcgagactgacctgagaacacacacacagggacaggccttctccctgtccgtcttccac
cactggcagattgtccctggtgaccccctggacaagagcatcgtgatcaggccgctggag
ccccagcctgcccctcacctggccagagagttcatgatcaagacccgccggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttcttcgacgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
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