Oncorhynchus keta (chum salmon): 118365455
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Entry
118365455 CDS
T09424
Name
(RefSeq) sodium channel protein type 4 subunit alpha A-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oke04040
]
118365455
Ion channels [BR:
oke04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118365455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
IQCJ-SCHIP1
GPHH
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
118365455
NCBI-ProteinID:
XP_035603582
LinkDB
All DBs
Position
3:6607952..6643885
Genome browser
AA seq
1780 aa
AA seq
DB search
MFIMITILSNCFFMTMSDPPSWSKTVEYVFTGIYTFEASCKVLSRGFVVGPFTFLRDPWN
WLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALVQSVKKMVDVM
ILTVFALAVFALIGLQLFMGNLRNKCVRWPILNSTVFDDYNFTSSLDGTMGFDETSNSTV
PVDFKEYISNIENHYYLEGSLDALLCGNSSDAGKCPEGFTCIKAGRNPNYGYTSYDSFGW
AFLSLFRLMTQDYWENLFQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYDEQN
EATLKESQDKEEEFQRLLEQYRIQAQEQADAADGSQATLTSRKELSHHSGSYGGSADDEQ
SLGDDVIKDCNGRIVPRLAIVPVSSESESVPEDELKEDSMFHLEQPGLKNRSESAVSVLT
TVMEELEDAQKPCPPGWYKFADIFLKWDCCVPWVWLKKWLLFIVMDPFVDLGITICIVLN
TLFMAMEHYPMSPEFDHMLSVGNLVFTGIFTAEMVFKLCAMDPYYYFQVGWNIFDSIIVT
FSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIV
FIFAVVGMQLFGKSYKECVCKIATDCELPRWHMHDFFHSFLIVFRILCGEWIETMWDCME
VAGAGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSSDDDGEMNNLQIAIGRINWG
IDWVKASVRHMVLQLLGKKATGDKEGGEGIEGNPEKETFALNHLDTCQDSKMADGMTNCV
DGLQADGEMSLNVPIAQGETDFENDDDYSGSFTSDEENGQGDHLKLLGAVGDESSVCSTV
DYVPEPEPVEEEEEEEPEPEEPEACFTDGCISRWPCLTFDVSQGRGKKWWNLRRTCFTIV
EHDYFETFIVFMILLSSGALAFEDIYIERRRTIKIILEYADKVFTYVFIIEMLLKWVAYG
FKTYFTNAWCWLDFLIVDVSLVTLGANWMGYSELGPIKSLRTLRALRPLRALSRFEGMRV
VVNALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPITEVNNRSD
CLALQHATQEARWVNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREVEEQPSYEI
NLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGDDIFMTEEQKKYHEAMKKLGS
KKPVKPIPRPTNMIQGAVFDFITQQFFDIFIMVLICLNMVTMMVETDDQSAEKENVLYKI
NLAFIVVFTGECLLKMFALRHYFFTIGWNIFDFVVVILSVAGIMLSDIIEKYFVSPTLFR
VIRLARIGRVLRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVK
KQAGIDDIFNFQTFGSSIICLFEITTSAGWDGLLLPILNSGPPDCDPDIENPGSDVRGNC
GNPGMGIMFFCSYIIMSFLVVVNMYIAIILENFNTAQEESGDLLCEDDFVMFDETWEKFD
LEGTQFIEYAKLSEFCDTLQEPLRIAKPNRIKLISMDLPLVTGDKIHCLDILLAVTLEVL
GEGVEMTAMKVSIEAKFNMNNPTTDSYEPITTTLRRKEEEAAAVIIQRAYRKHLLKRSIL
HASFMRRSKRQKRWEENEEPPETEGLLVRKMNVLYGSDLDLAAEMELAGLHAQPISVPLV
SNRPSDLPKQTQTTRPEPGRPLLLVVPVEVTSEVVLHSAPVASDPPLDLPEQTQPSGSEP
TGLEPTWPEPAGPNLLVVPVEVTPYLCSRESIDSLRESIV
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcatgattaccattctgtcgaactgcttttttatgacgatgagcgacccaccg
tcatggagtaaaactgttgagtatgtttttactggtatttatacctttgaggcctcatgc
aaagtgttgtcaagaggctttgttgtcggcccttttacattccttcgagatccatggaat
tggctggatttcatggtgatcagcatggcgtacgtcactgagtttgttgatctaggcaac
gtgtcagcccttaggacgttccgtgtactccgagcccttaaaaccatcactgtgattcct
ggattaaaaaccatcgtgggcgccctggtccagtctgtaaagaaaatggtagacgtgatg
atcctcactgtgttcgccctggccgtgtttgcgctcatcggcctgcaactcttcatggga
aatttgcgcaacaagtgtgtccggtggcccatcctcaactcaacggtgttcgacgattac
aacttcacctcgtcgcttgacggcaccatgggtttcgacgaaacatcaaattccactgtt
cccgtcgatttcaaggagtacatcagcaatatagagaaccactactatttggaaggtagt
ctggatgctcttctctgcggaaacagctctgatgctgggaagtgcccagaaggattcacg
tgcataaaggctgggaggaaccccaactacggctacaccagctacgactccttcggctgg
gccttcttgtccctcttcagactcatgacgcaggactactgggagaacctgttccaactg
acacttcgagcagcagggaagacgtacatgatcttctttgtgctggtcatcttcctgggt
tccttctacctcatcaacctcatcctggccgtggttgccatggcctacgacgagcagaac
gaggccactctgaaagagtcgcaggataaggaggaggagtttcagaggcttctggagcaa
tacagaatccaagctcaggagcaagctgatgctgctgatggaagtcaggcgaccctgaca
agtcggaaagagcttagtcatcactctgggtcatacgggggctctgcggatgacgagcag
agcctcggagatgatgtaatcaaggactgtaatgggagaatcgtgccccgtctggccatc
gttccagtgtcctctgagtcggagtcggttccagaggacgagctcaaagaggacagcatg
ttccatctggagcagccaggcctgaagaacagatcggagagtgctgttagtgttctcacc
accgtcatggaggagctggaagatgcccagaagccttgtccacccggctggtacaagttt
gccgacatcttcctgaagtgggactgttgcgtgccctgggtatggttgaagaagtggttg
ctctttattgtgatggaccccttcgtggacctaggcatcaccatctgcatcgtgctcaac
accctcttcatggccatggagcactaccccatgagcccagagtttgaccacatgctctcc
gtggggaacctggttttcactgggatcttcacagcagagatggtcttcaagctttgcgcc
atggatccgtattactacttccaggtcggctggaacattttcgacagtatcattgtcacg
ttcagtctggtggagttaggtctagccaatgtccaaggcctgtccgttctcaggtctttc
cgattgctgcgtgtcttcaaactagccaagtcgtggcccacgctcaacatgctgatcaag
attattggcaactctgtgggcgctctgggcaacctgaccttggtgctggccatcatcgtc
ttcatcttcgccgtggtgggcatgcagctctttggcaagagctacaaggaatgcgtgtgt
aagattgccaccgactgcgagttgccacgttggcacatgcacgacttcttccactcattc
ctcatcgtgtttcgcatcctgtgcggggagtggatcgagaccatgtgggactgtatggag
gtggccggagccgggatgtgcctggtggtcttcatgatggtcatggtcatcggaaacctg
gtggtgctgaacctcttcctggccttgctgctcagctcattcagtggagacaacctgtcc
agtgatgacgacggtgagatgaacaacctccagatcgccatcggcaggatcaactggggc
atcgactgggtgaaagcctctgtccgccacatggtcctgcagctactgggcaaaaaggcc
accggggacaaggaagggggtgaggggatcgaaggaaaccccgaaaaggagacctttgca
ctaaaccacttagacacgtgccaggattccaagatggccgacgggatgaccaactgtgtg
gacgggcttcaggcagatggcgagatgagcctcaatgtgcccattgcccagggggagact
gattttgagaacgatgatgactacagtgggtcttttacatcagatgaagaaaatggacaa
ggtgatcacttgaagttgttgggtgcagtgggtgacgagtcctcggtgtgcagcacggtg
gactatgtacctgaaccagaacctgtggaagaggaggaagaggaggagccagagccagag
gaaccagaagcttgcttcactgatggctgtatctctcgatggccatgtctgacttttgac
gtctctcagggcagaggcaagaagtggtggaacctccgcaggacctgtttcaccatcgtg
gaacacgactactttgagaccttcatagtcttcatgatcctcctaagcagtggagctctg
gcttttgaggatatttacattgagaggagaagaactatcaaaatcatcctggagtatgca
gacaaagtcttcacctatgtctttatcattgagatgctcttaaaatgggtggcgtacggc
ttcaagacctacttcaccaacgcttggtgttggctggacttcctaattgtggatgtttcc
ttagtcactttaggagctaactggatgggctactctgaacttggaccaatcaagtctctt
agaacactcagggctctaaggccacttcgagccctgtcaagatttgagggaatgagggtg
gtggtaaacgctcttgtcggcgccatcccctccatcttcaacgtgctgctggtgtgcctc
atcttctggctcatcttcagcatcatgggggtcaacctgtttgccggaaagttctaccgc
tgcatcaacaccaccacggaggagctgttccccatcaccgaggtcaacaacaggagcgac
tgccttgccctgcagcacgccacccaggaagcccgctgggtcaacgtcaaagtcaactac
gacaacgtgggcttgggctacctctctctgctgcaagtggccacatttaaaggctggatg
gacatcatgtatgctgctgtggactctcgagaagtggaggagcagccctcgtatgagatc
aacctctacatgtacatctactttgttatcttcatcatcttcggctccttcttcaccctc
aatcttttcattggtgtcattattgacaatttcaaccagcaaaagaaaaagtttggtgac
gacatctttatgacagaagagcagaagaaatatcatgaagccatgaagaaacttggctcg
aagaagccagtgaagcctatcccaaggcctacgaacatgattcaaggcgctgtgtttgac
ttcatcactcagcagttctttgacatcttcatcatggtcctcatctgcctcaacatggtc
accatgatggtggagacggacgaccaaagcgcagagaaggaaaatgtcctttacaagatc
aacctggccttcatcgtcgttttcaccggcgagtgtctgctcaagatgtttgcccttcgc
cattacttcttcaccatcggatggaatatttttgattttgtcgtggtcatcctgtccgtc
gcgggtataatgctgtcggacatcatagagaagtactttgtgtcacccaccttgtttagg
gtcatcaggctggctaggataggcagggtcctgcggctcatcaaaggtgccaagggcata
aggacgctgttatttgcgttgatgatgtcactccctgccctgttcaacatcggcctcctg
ctcttcctcatcatgttcatcttctccatattcggcatgtccaactttgcctacgtcaaa
aaacaggcgggcatcgacgacatcttcaatttccagacgttcggcagcagtattatctgc
ctgtttgagatcaccacctctgcgggttgggatggtcttctgctgccaattctaaacagc
ggtcctccagactgcgacccagacattgagaacccgggctcggatgttcgtggcaactgc
ggcaacccaggcatgggtatcatgttcttttgcagttacatcatcatgtccttcctggtg
gtggtcaacatgtacatcgccatcatcctggagaacttcaacacggcccaagaggagagc
ggagacctgctgtgcgaggatgactttgtgatgttcgacgagacctgggagaagttcgac
cttgagggcacgcagttcatcgaatacgccaagctgtcagagttttgtgacaccctgcag
gaacccctgcgtatcgccaagcccaaccggatcaagctgatctcaatggacctgcccctg
gtcacgggcgataagattcactgcctggacatcctgctggctgtcaccctggaggtgctg
ggcgaaggggtggagatgacggccatgaaggtgagcatcgaggccaagttcaacatgaac
aaccccacgactgactcctacgagcccatcaccaccacgctgcggcgcaaggaggaggag
gcagcagccgtgatcatccagcgggcataccgcaagcaccttctcaagcgctccatcctg
catgcctccttcatgcgccgctccaagaggcagaaaaggtgggaggagaacgaggagccc
ccggagacggagggacttctggtgcgaaagatgaacgtgctctatgggagcgacctggac
cttgccgcagagatggaattggctgggttgcatgcgcaacccatatcggtccctctggtg
tccaatcggccatcggacctccccaagcaaacccagaccaccaggccggagcctggcaga
ccactcctcttggtggtccccgttgaggtcaccagtgaggtggtgttacactcagcccct
gtggcgtctgacccaccattggacctccccgagcaaacacaaccatcggggtcggagccc
acagggctggaacctacctggccggagcctgctgggccaaacctcttggtggtccccgta
gaggtcaccccctatttgtgtagccgtgagtcaatagacagcctgcgagagtcgattgta
taa
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