Oncorhynchus keta (chum salmon): 118365561
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Entry
118365561 CDS
T09424
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03272
Virion - Hepatitis viruses
oke04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
118365561
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118365561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118365561
Membrane trafficking [BR:
oke04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
118365561
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GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
118365561
NCBI-ProteinID:
XP_035603767
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Position
32:28970566..28984442
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AA seq
880 aa
AA seq
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MGRLLCVLLVFLPCCVVQTNTETVCGIGQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CSARTCGTTEFSCSGRLNQCVPSTWLCDGKADCENGADEESCAPKHCTDTKFHCSNGQCV
SASFVCDEELDCDDGSDEASCPPTTCSSTSFQCNNSVCVPHLWACDGDTDCSDGSDEWPQ
NCGTRAPGGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEMGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKFGYECQCPTGYYLTDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PHLKNAVALDMDMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFRNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDNIVWPNGITLDLLNQRLYWVDSKLHTLSSIDVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPATPVKPIV
PSPNPPPAPARTSPAPPARAATKAPIIATTVTPAPPRTTKPVPRNPQPAQPDTPRIPQAQ
TTTVPQVTTQDIHHEFAAIPTVPSTPAALYIALPIAIVCLVAFVAVLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggacggctgctgtgcgtgctgttggtgttcctgccttgctgtgttgtccaaacaaac
acagagacagtatgcgggatcgggcagttcctgtgtgggaacgggaagtgcattacgctg
agatgggtgtgtgatgacacagatgattgtggagatggaactgacgagctccccggaacc
tgctcggccagaacatgcggaaccacagagttcagctgtagtggacgtctgaaccagtgt
gttcccagtacctggctctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataccaaattccactgcagtaacggccagtgtgtg
tctgcctcctttgtgtgtgatgaggagttggactgtgatgacgggagcgacgaggcttcc
tgcccacccaccacctgtagctccacctccttccagtgcaacaactctgtatgtgtgccg
cacctgtgggcctgcgacggagacactgactgctcggatggctccgacgagtggccccag
aactgtgggacgcgagcccctgggggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggtcgccaatgtaaccgccagtacgactgcagagat
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagttcggctatgagtgccaatgtcccaccggc
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagacatc
tgcagtcagatctgtgtcaatcatatgggcagctacaagtgcgagtgtgaggagggctac
caggtcgacccagcgaccaaagcctgcaaggccattggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccacctgaagaatgcagtggctctggacatggacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagca
cagcacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctctgtgtcaaccgcc
aacgggagccgccgcaagactctcttccggaatgacctggccaagccccgcgctattgtg
gtcgacccccacagcaacttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacaacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcgacgtccagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcaactccagtcaagcccattgtt
ccctcccccaaccccccaccggcacccgcccgcacctcccctgcacctccagcccgcgcc
gccactaaggcccccatcatcgctaccacagttacgcctgcgcctccccgcactaccaag
cctgtgccacgcaacccccagcctgcccagccagatacacccaggatcccccaggcccag
actaccacagtgcctcaagtcaccactcaggacatccaccatgaatttgctgctataccc
acagtcccttcaacccctgcagctttatacatcgcgctgcctatagccattgtgtgtctg
gtggcatttgttgccgtgctgctgtggaggaactatagactgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagatggctactcctacccaccgagacagattgtgagtcttgatgatgaggct
tga
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