Oncorhynchus keta (chum salmon): 118372856 Help Entry 118372856         CDS       T09424                                  Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism oke  Oncorhynchus keta (chum salmon) Pathway oke04115   p53 signaling pathway oke04145   Phagosome oke04148   Efferocytosis oke04350   TGF-beta signaling pathway oke04510   Focal adhesion oke04512   ECM-receptor interaction oke04518   Integrin signaling oke04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oke00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     118372856   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     118372856    04518 Integrin signaling     118372856  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     118372856    04148 Efferocytosis     118372856   09143 Cell growth and death    04115 p53 signaling pathway     118372856   09144 Cellular community - eukaryotes    04510 Focal adhesion     118372856   09142 Cell motility    04820 Cytoskeleton in muscle cells     118372856  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oke04131]     118372856   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oke00536]     118372856 Membrane trafficking [BR:oke04131]  Endocytosis   Phagocytosis    Opsonins     118372856 Glycosaminoglycan binding proteins [BR:oke00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    118372856 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Laminin_G_1 Motif Other DBs NCBI-GeneID:  118372856 NCBI-ProteinID:  XP_052380154 LinkDB All DBs Position 8:40975386..40994745 Genome browser AA seq 1174 aa AA seqDB search MKLTGIFLLLMLLTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI VLIDDTINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG RQTETCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT QQCNKNVCPIDGCLSNPCFPGTKCTSFPDGTWRCGKCPSAYSGDGIKCKDIDECKEVPDA CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHECN KNARCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPL EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGKEQ NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttctgctgttgatgcttttgacctgcgagagcgtacgagtt gcagagaaccgagacgacaatagcgtgtacgacctgttcgaactggtccaagtctccaag aagaaccacggagtgaccctggtgaaaggcgacgacccatacagtcccgcctacaagatc ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc atccatgccgagaggggcttcctcctcctgcttaacttcaagcagtttaagcggaccagg ggctccctcttgaccgtggagaagcgggacggatcaggagccgtgttcgagattgtctcg aatggaaaagcgaacaccctggatgtggttttctccaccgttaacaagcaacaggtggtg tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgcg cccattcagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag ggagcggtgaaagaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc acgttggacgcgattctgcgcaacaagggatgtcaaaactctgttctgacggatgagatc gtccttatcgacgacaccatcaatgggtccagccctgccattaggacggactacactggc cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg ttcaaggaactgaaggggttgggagtggtggtgaaggagctgtctaacgagctgcgcaaa gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg cacaacggcatcgtccacaagaacaaggccgagtggaccgtcgacgactgtaccgagtgc acttgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc aacgcaactgtgcccgatggagagtgctgcccgcgctgtggaacaccgagtgactacgcg gaggatggatggtccctgtggtctgaatggacccactgttccgtgtcttgtgggcgggga attcagcagagaggccgctcctgcgaccgcattaacaacaactgcgagggaacctcggtc caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt atccgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga agacagactgagacgtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgtctc tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgactccaaggccact cagcagtgcaacaagaacgtctgtcccatcgatggctgtctgtccaacccttgcttccct gggaccaagtgcaccagcttccctgatggaacatggaggtgtggaaaatgtccctctgct tactctggtgacggcatcaagtgcaaggacattgacgagtgcaaagaggttcctgacgct tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg ccctgtcccgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc gccaagaaacaggtgtgtacaccacgtaacccctgcctggatgggagccacgaatgcaac aagaatgcccgctgtaactacctgggacaatttgccgaccccatgtaccgctgtgagtgt aagcctggctatgctggaaatggacacatctgtggtgaggacacggacctggacggatgg cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccgttcgtgtac aaccccaggcaatatgactatgacagagatgatattggagatcgttgtgataactgtcct tacaacagcaaccctgaccagaccgacacagacaacaacggtgaaggagacgcctgctct gtggacattgatggagatggcattctgaatgagaaagacaactgcccgtacgtctacaac gtggaccagaaagacactgacctggacggtgtgggagacatgtgtgacaactgtcctctg gaacacaaccctgaccaggttgactctgatgacgatcgtgtgggagataagtgtgacagc aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccctacatcccc aacgctaaccaggccgaccacgacaaagacggcaagggagacgcctgcgaccacgatgat gacaatgacgggatcccagacgagaaagataactgcagactggccttcaaccctgaccag atcgactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaac gtccctgacatctacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg aagttccagatggttcctctggaccccaagggaacgtcccagatcgacccaaactgggtg gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt ggttttgatgagttcaactctgtggacttcagtggaaccttcttcatcaacacagagaga gatgatgactacgccggctttgtgttcggataccagtccagctccaggttctacgtggtg atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac tcaggactgtccatcaaggtggtcaactccactactggacctggagagcacctcaggaac gctctctggcacactggtaacaccccaggacaggtgaagactctttggcacgaccctaag aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca ggacacatcagagtggtcatgtacgaggggaagaagattatggctgattctgggagcata tatgacaagacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta tacttctcagacctcaagtatgaatgcagaggtaaggaacaatga

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