Oncorhynchus keta (chum salmon): 118372856 Help Entry 118372856         CDS       T09424                                  Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism oke  Oncorhynchus keta (chum salmon) Pathway oke04115   p53 signaling pathway oke04145   Phagosome oke04148   Efferocytosis oke04350   TGF-beta signaling pathway oke04510   Focal adhesion oke04512   ECM-receptor interaction oke04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oke00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     118372856   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     118372856  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     118372856    04148 Efferocytosis     118372856   09143 Cell growth and death    04115 p53 signaling pathway     118372856   09144 Cellular community - eukaryotes    04510 Focal adhesion     118372856   09142 Cell motility    04820 Cytoskeleton in muscle cells     118372856  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oke04131]     118372856   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oke00536]     118372856 Membrane trafficking [BR:oke04131]  Endocytosis   Phagocytosis    Opsonins     118372856 Glycosaminoglycan binding proteins [BR:oke00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    118372856 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Laminin_G_1 Motif Other DBs NCBI-GeneID:  118372856 NCBI-ProteinID:  XP_052380154 LinkDB All DBs Position 8:40975386..40994745 Genome browser AA seq 1174 aa AA seqDB search MKLTGIFLLLMLLTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI VLIDDTINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG RQTETCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT QQCNKNVCPIDGCLSNPCFPGTKCTSFPDGTWRCGKCPSAYSGDGIKCKDIDECKEVPDA CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATAKKQVCTPRNPCLDGSHECN KNARCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPL EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGKEQ NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttctgctgttgatgcttttgacctgcgagagcgtacgagtt gcagagaaccgagacgacaatagcgtgtacgacctgttcgaactggtccaagtctccaag aagaaccacggagtgaccctggtgaaaggcgacgacccatacagtcccgcctacaagatc ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc atccatgccgagaggggcttcctcctcctgcttaacttcaagcagtttaagcggaccagg ggctccctcttgaccgtggagaagcgggacggatcaggagccgtgttcgagattgtctcg aatggaaaagcgaacaccctggatgtggttttctccaccgttaacaagcaacaggtggtg tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgcg cccattcagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag ggagcggtgaaagaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc acgttggacgcgattctgcgcaacaagggatgtcaaaactctgttctgacggatgagatc gtccttatcgacgacaccatcaatgggtccagccctgccattaggacggactacactggc cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg ttcaaggaactgaaggggttgggagtggtggtgaaggagctgtctaacgagctgcgcaaa gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg cacaacggcatcgtccacaagaacaaggccgagtggaccgtcgacgactgtaccgagtgc acttgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc aacgcaactgtgcccgatggagagtgctgcccgcgctgtggaacaccgagtgactacgcg gaggatggatggtccctgtggtctgaatggacccactgttccgtgtcttgtgggcgggga attcagcagagaggccgctcctgcgaccgcattaacaacaactgcgagggaacctcggtc caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt atccgcctctgcaactcccccacaccccagctgggaggcaaggactgccaaggagaggga agacagactgagacgtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgtctc tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgactccaaggccact cagcagtgcaacaagaacgtctgtcccatcgatggctgtctgtccaacccttgcttccct gggaccaagtgcaccagcttccctgatggaacatggaggtgtggaaaatgtccctctgct tactctggtgacggcatcaagtgcaaggacattgacgagtgcaaagaggttcctgacgct tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg ccctgtcccgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc gccaagaaacaggtgtgtacaccacgtaacccctgcctggatgggagccacgaatgcaac aagaatgcccgctgtaactacctgggacaatttgccgaccccatgtaccgctgtgagtgt aagcctggctatgctggaaatggacacatctgtggtgaggacacggacctggacggatgg cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccgttcgtgtac aaccccaggcaatatgactatgacagagatgatattggagatcgttgtgataactgtcct tacaacagcaaccctgaccagaccgacacagacaacaacggtgaaggagacgcctgctct gtggacattgatggagatggcattctgaatgagaaagacaactgcccgtacgtctacaac gtggaccagaaagacactgacctggacggtgtgggagacatgtgtgacaactgtcctctg gaacacaaccctgaccaggttgactctgatgacgatcgtgtgggagataagtgtgacagc aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccctacatcccc aacgctaaccaggccgaccacgacaaagacggcaagggagacgcctgcgaccacgatgat gacaatgacgggatcccagacgagaaagataactgcagactggccttcaaccctgaccag atcgactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaac gtccctgacatctacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg aagttccagatggttcctctggaccccaagggaacgtcccagatcgacccaaactgggtg gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt ggttttgatgagttcaactctgtggacttcagtggaaccttcttcatcaacacagagaga gatgatgactacgccggctttgtgttcggataccagtccagctccaggttctacgtggtg atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac tcaggactgtccatcaaggtggtcaactccactactggacctggagagcacctcaggaac gctctctggcacactggtaacaccccaggacaggtgaagactctttggcacgaccctaag aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca ggacacatcagagtggtcatgtacgaggggaagaagattatggctgattctgggagcata tatgacaagacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta tacttctcagacctcaagtatgaatgcagaggtaaggaacaatga

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