Oncorhynchus keta (chum salmon): 118376080
Help
Entry
118376080 CDS
T09424
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04010
MAPK signaling pathway
oke04020
Calcium signaling pathway
oke04510
Focal adhesion
oke04518
Integrin signaling
oke04540
Gap junction
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118376080 (pdgfrb)
04020 Calcium signaling pathway
118376080 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
118376080 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118376080 (pdgfrb)
04540 Gap junction
118376080 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
118376080 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oke01001
]
118376080 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oke04090
]
118376080 (pdgfrb)
Enzymes [BR:
oke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
118376080 (pdgfrb)
Protein kinases [BR:
oke01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
118376080 (pdgfrb)
CD molecules [BR:
oke04090
]
Proteins
118376080 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
RIFIN
VEGFR-1-like_Ig-like
Ig_VEGFR-1-like_5th
SOI
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
118376080
NCBI-ProteinID:
XP_035618642
LinkDB
All DBs
Position
4:complement(47506460..47560686)
Genome browser
AA seq
1096 aa
AA seq
DB search
MRSVRVCTLHLTTILTALLHFCPEFCCLEISPSNSEVVMTAGDSMIITCSGWGTVEWRFK
RDDNVPYFGVENQNTTSVLILDNVTWSQTGVYVCTEAWTDETIEVAVFVPDPDVWFIESF
HGMVTKTSEEGIIPCVVTNPQINVTLYERDSDMNLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVFSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDSIEPLTDVLSSQKMRSRLIVSKVTLANTGQYACHVHEGVQDQRATANVNITILEQGFV
ELRSVQDRNVSAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNVVITKQEHETRYVST
LTLVRIRTEQKGLYTVHVANGDDTKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDSMLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRMVGQVRSQVIFHKP
QQVSVRCEASNERGLRRRDVKLVSSTFFSQVAVLAAVLALVVIVIISIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMPRDSLVLGRTLGSGAFGRVVEATAYG
LSHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHKNKHTFLQYYLEKNQEDSGCRISGGSTPLSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQEMKDTIKYADIQPSPYESPYQHDHYQEQDQITMDPALFISDSTTLS
YTDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYDVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFLTPAITPSTAPDSLQDLNPYPLTGDFRPEADGEEVTTSYNDYI
IPIPDPKPQEEDFSEANRMPMESPASSLVLEDEEADSISQETAEADTIPEEEDLHANQAL
IPLESSGTPEVEDSFL
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtatgcactctccatctgacaacaattcttacagctcttttacac
ttctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagtcgtcatgaca
gcgggtgactccatgatcattacctgttctggctgggggacggtcgaatggaggttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaatgtgacgtggagccaaacgggagtatatgtctgcaccgaggcttggactgac
gagactatagaggtggcagtctttgttccggatcctgatgtgtggttcattgagagtttc
cacggcatggtgaccaagaccagcgaggaggggatcatcccgtgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagagacagtgacatgaacctgaagggggtctacatc
ccaagtgagggctacagggcgccgctggaggacaggacctatgtgtgccgaggagagctg
aacggggaggagaaagagtcccaggctttctacgtattcagcattgttgttccggagacg
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgaccgtg
aactgcacggtgcacggagtggagctggtcttcttctcctgggactatcccaatagagac
gtggactccattgagcctctgactgacgtcctgtcatcccagaagatgcgctcacgcctc
atagtctccaaggtgacgctggccaacacgggccagtacgcgtgccatgtccacgagggt
gtccaggaccagagagccacagccaacgtcaacatcaccatccttgagcaaggcttcgtg
gagctgaggtccgtccaggatcgtaatgtctcggcccagctgcaccagaacgtagagctg
agggtggagattgaagcttacccccctccacgtgtccgctggaccaaagatgatgccacg
gtcaacggggacaacgtcgtaatcaccaagcaggagcatgagaccaggtacgtcagcacg
ttgaccctggtgaggatcaggacagaacagaaaggcctctacaccgttcacgtcgccaac
ggcgatgacaccaagaaattgacctttgatctagaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctccctgggaagaggcatgcagtgacctgtgtggctgagggg
gtaccttcccccaccatccagtggttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagcccctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtatggtgggccaggtccgcagccaggtcatcttccacaagccc
cagcaggtgagcgtccgctgtgaggccagcaacgagagaggactccgcaggagggacgtc
aaactggtgtccagcacttttttctcccaggtggcagtgttggctgcggttctagccctg
gtagtcatcgtcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagatcagatggaaggtgatcgagtcagtgagtctggacggacatgagtacatctat
gttgaccccatccatctgccctatgaccttgcctgggagatgccccgagacagcctggtg
ctgggtcgtactcttgggtccggagcattcggcagggtggtcgaagcgaccgcgtatggt
ctcagtcattcccagtccagcacaaaagtggcagtgaaaatgctcaaatccacagccagg
aggagtgagacccaggctctaatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacattgtcaacctgctgggggcctgcaccaaacagggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaagaacaagcacacgttcctg
cagtactaccttgagaagaaccaggaggactctggctgccgcatctctggagggagcacc
cctctcagccaaaggaaaggctacgtgtcatttggcagtgagtgtgacggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagatgaaagacaccatc
aaatacgctgacatccagccttctccctatgagtctccctatcagcacgaccattaccag
gaacaagaccagatcacaatggaccctgccctgttcatcagtgactctactacacttagc
tatactgacctcatcggcttcagctaccaggtggccaaaggcatggagttcctcgcctcc
aagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcctagccagagacatcatgcacgattccaactacatctcc
aaaggcagtacattcctgcccctgaagtggatggccccagagagtatcttccataacctg
tacaccaccctgagtgacgtgtggtcctatggcatcttgctctgggagatcttcaccctt
ggaggaaccccttaccctgaccttcctatgaatgagctgttttacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgatgtgatgcagaag
tgctgggatgagaaacatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaagtcaacgacgagttcttcaag
agtgaccacccggccgtggtcagaaccaaacccaggctctcctcccccttcctcacccca
gccatcaccccctccaccgcccctgactccctccaggatctcaacccctaccccctaact
ggagactttagaccggaggcagatggagaggaagtgactacctcctacaatgactacatc
attcccatcccggaccccaagcctcaggaggaagacttctctgaggccaaccgcatgcca
atggaaagccccgcaagctctctggttctggaggatgaagaggctgattccatctcccag
gagacagccgaggcagacaccattccagaagaggaggatctccatgccaaccaggctctg
attccactggaatcttctggaacaccggaagtggaagacagcttcctgtag
DBGET
integrated database retrieval system
