KEGG   Oncorhynchus keta (chum salmon): 118379005
Entry
118379005         CDS       T09424                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke04010  MAPK signaling pathway
oke04137  Mitophagy - animal
oke04141  Protein processing in endoplasmic reticulum
oke04210  Apoptosis
oke04217  Necroptosis
oke04621  NOD-like receptor signaling pathway
oke04622  RIG-I-like receptor signaling pathway
oke04920  Adipocytokine signaling pathway
oke05132  Salmonella infection
oke05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    118379005
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    118379005
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    118379005
  09143 Cell growth and death
   04210 Apoptosis
    118379005
   04217 Necroptosis
    118379005
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    118379005
   04622 RIG-I-like receptor signaling pathway
    118379005
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    118379005
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    118379005
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    118379005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oke03019]
    118379005
   04121 Ubiquitin system [BR:oke04121]
    118379005
Enzymes [BR:oke01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118379005
Messenger RNA biogenesis [BR:oke03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     118379005
Ubiquitin system [BR:oke04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    118379005
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 zf-C3HC4_2 TRAF3_RING zf-C3HC4_4 Sina_ZnF SlyX zf-RING_5 zf-RING_4
Other DBs
NCBI-GeneID: 118379005
NCBI-ProteinID: XP_052381557
EnsemblRapid: ENSOKEG00005000661
LinkDB
Position
9:26710185..26747008
AA seq 619 aa
MATEEPSPPSSMESNKPGFPKQILANKLEDKHLCNCCQKLLRRPFQAQCGHRFCSYCFNR
TVRDGPQKCSACIKEDIFEEPTSILKQGCAFPDNAARREVENLSVVCINEGCTWKGNIKE
YELSHEGKCDYMIIPCPSCKEQIRFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKERIHDHERACT
YEHLNLLLHYIMGMKVSMEGLQPQGLELAGHKLLELHHSLRELEARVSQLSTTSTGPPVQ
GATNSSSSPCLSGPPALALPLPPPPALAPTLTVSTSFTPLPSSVGAALELQLHSEKTKVA
ELGRRCTDLEVKAGMFENVVCVLNREVERFATTMEASNRQHRLDQDKIEALSNKVRQLER
TVGLKDLTVAEMEGRLREISGTTFDGVFIWRISDFTKKRQDAIAGRAPAMFSPAFYTSKY
GYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKMVCLCLPASGSGWSERS
HSHFALQVTLMLLDQSNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKN
SYIRDDTIFIKAIVDLTGL
NT seq 1860 nt   +upstreamnt  +downstreamnt
atggccacggaagaaccatcccctccgtcgtccatggagagcaacaaacccggcttcccc
aaacagatcctggccaacaagctggaagataaacacctgtgtaactgctgtcagaagctg
ctgcggaggcccttccaagcccagtgtggacaccgcttctgttcctactgcttcaatagg
actgtcagagatggacctcagaaatgcagtgcttgtatcaaagaggacatttttgaagag
cccacgtcgattctaaaacaaggctgtgcttttcctgacaacgcagctcgacgagaggtc
gaaaacctctctgttgtctgcatcaacgaaggctgtacatggaaaggcaatattaaagaa
tatgagttgagccacgaggggaagtgtgactacatgatcatcccctgcccctcctgtaaa
gagcagatccgcttcaacgaacaggaacgccacaacgagcgagagtgccctgagagaact
ctcaactgcaagtactgcaaggaaccatttcatttcaaaaacatcaaggcccacgacgag
atctgccccaagtaccccatgatctgtgaaggctgtgccaagaagaaaatacccagggag
aagtacgtggaccacattaagttctgcagcaaattcagaacgccatgcagattccatgtt
gttgggtgtgatatgtcagtggagaaggagaggatccatgaccacgagagggcctgcacc
tatgagcacctcaacttgctgctgcactacattatggggatgaaggtgagcatggagggc
ctgcagccgcaaggcctggagctggctggacacaagctcctggagctccaccattccctc
agggagctggaggcacgcgtctcccagctcagcactacatccaccgggcctcccgtgcag
ggggccaccaactcttcttcctccccgtgcctctccgggcctcccgccctagctcttccc
ctgcctccacctcccgccctggcccccaccctgactgtgtccacctccttcacccccttg
cccagctcggtgggggcggccctggagctacagctccacagtgagaagaccaaggtggcg
gagctgggacgcaggtgcaccgacctggaggtgaaggcggggatgtttgagaatgtggtt
tgcgtgttgaaccgagaggtggagcgctttgccacaaccatggaggccagtaacagacag
catcgcctagaccaggataagattgaggccctgagcaacaaggtgcggcagctggagagg
acggtggggctgaaagacctgacggtagcagagatggaaggcaggctgagggagatatcg
ggcaccacattcgacggcgtcttcatctggaggatttctgactttaccaaaaaaagacag
gatgccatcgctggccgagctcctgccatgttctcaccagccttctacaccagtaaatac
ggctacaagatgtgtctgcggatctacctgaacggggacgggacagggcgtggcagccac
ctgtctctgttctttgtggtgatgaggggactgagtgatgctctgctcaaatggcccttc
aaccagaagatggtctgcctttgtctccctgcttccggttccggttggagcgagcggtcg
cattcgcacttcgctctgcaggtgactctgatgctgctggaccagagtaacagggagcac
atcatcgatgccttccggcccgacgtcacttcctcctccttccagaggcctgtaagtgag
atgaacatcgccagcggctgcccgctcttctgcccgctctccaagctcgacgccaagaac
tcctacatccgcgacgacaccattttcattaaggccatcgtggatctcacaggcctctag

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