Oncorhynchus keta (chum salmon): 118381030
Help
Entry
118381030 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor TIAM1-like
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04530
Tight junction
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
118381030
09142 Cell motility
04810 Regulation of actin cytoskeleton
118381030
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oke04990
]
118381030
Domain-containing proteins not elsewhere classified [BR:
oke04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
118381030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
Tiam_CC_Ex
RhoGEF
PH
RBD
PH_9
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
118381030
NCBI-ProteinID:
XP_052324637
LinkDB
All DBs
Position
18:48943803..49211662
Genome browser
AA seq
1740 aa
AA seq
DB search
MGNVESQNGDHAFYGTQHGYLSRKHMSRSLRISKHQSSSGSTRCTHDRHATQGKVEHRNS
ETSTRSSSTPSIPQSLADHALEPFNQTNVLSDFXPIWVDRMAMNLRPVSFHTHLDNPSVG
PHLDNPSVGPHLDNPSVGPHLDNPSVGPHLDNPSVGPQLDPATPGTRPQCPQDRGLGLYN
NTGDGTYLQKTRDGPREPREPREGVSFKKKRSKSADMWREHSLEFSLSDLSQEHLTSTEE
IIDTEEADDRDFPDCEGLLGLVSPEGLEGVDAAGRANSLDQLYGGQKTPTRRPVARYAKW
HHDANREAREGEDDKMLSPSEEDGNSYGAYTLPCRRSHCLSEGLTNHQAASCNTMQGRRA
QTIQDVTAGEGSEYEDSGIDGVTASGAEHQSRRYKTMSMSFSVCSAAGRSLFAGSDSGSS
SGGGASEGVQGVYENFRQELEMSSCQTESLEEAGSALSDEQSVMSSAYQSDPLLSVAQGT
VRKAGRLAVKNFLVHKKNKKVESATRRKWKSYWVCLKGCTLFFYETDGRSGIDHNSAPKH
AVWAENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQSCSQTELENWITAIHSACAAAVARQ
HHREDTVRLLRVEIKKLEQKIDMDEKMKKMGDMQLSAVTDTKKRKTILDQIFLWEQNLEQ
FHMGLFRYRCYLASLQGGELPNPKRLLAVASRPTKLAMGRLGIFSVSSFHALVAARTESG
VRRRTQAMSRSSSSKRKSRFSSLWGLDTTSKKKTHPTINQVFADGEEPVKKPLDGIYDVD
TARERGKSHEGTVKSLPQVNSDSHMTDSDIWVPDHLTPSWVCLPNDQPVLAIIQPGESAL
DVLETICKAHRLDPAKHYLRLKFLIENQVQFYIPKPEEDVCDLLYKEIELGSKITKVIQF
DRDESCMIGYGFSISVVEEDSVQQLYITDVKAGGLAFAKGLNAGDEILQLNGKDSCRLKF
GDMKGAFSQASLSLTVNTLPSTDRRQICYLPPRRSDAQEVLHTDIFSMNQEEILDDGVGL
TLESSGDSLDDDSESFSEADQCRKSTEQVAAFCRSLHDMNPSECATSSSSPSLESPVPPP
ATGTRQLSDADKLRKVICELVETERTYVKDLHCLIGRYLTPLQKETCLTQDELDILVGNL
PEMVEFQVEFLKTLEDGTRLVPDLEKLERVDQFKKILFSLGGSFLYYADRFKIYSAFCAS
HTKVPKVLVKAKTDADFKAFLEERNPKQQHSSTLESYLIKPIQRVLKYPLLLRELYSLTD
PDSEEHYHLNVAMKAMNKVASHINEMQKIHEEFGLVFDQLIAEQSGDKKEVADLSMGDLL
LHTSVAWINPPSSLGKWKKEPQLAAFIFKTAVVFVCKDGSKQKKKMGGSHRVSSVSSEDK
DPFRFRHMISTDALQVRALNNQGTVQYRALNNQGTVQYRALNNQGTVQYRALNNQGTVQY
RALNNQGTVQYRGLNNQEGEASAVCEIVHVKSESEGRPERIFHLCCSSVDSKKDFLKTVH
SILRDKQRRQLMKTESLPPNQQYVPFGGKRLCALKGARPAMNRAVSDPARTLGRRKLVRN
RFTIDTDIVFDGEPDQESPLSPLSPEEPEGQGQKEGQGRAEVQAGDTDRWVEEQFDLERY
EEEQEAQVKGGGDVKETDILSDDDDFCQSVGGASAEPLSTTDLEGPLGALSMGEECKEVG
PKHLQPQGGTGTTTPGMRLSHPGKQCALVGVSVDDQGSKGEAEDIWVRREDCPSDSSELD
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgtggagagccagaacggcgaccatgccttctacggcacccaacatggctac
ctatcccgcaaacacatgtctcgttccctccgcatctccaagcaccagtccagctccggt
tccacccgctgcacccacgaccgccacgccactcagggcaaagtagaacaccgtaactct
gagacctccacgcgttccagcagcacccctagtatcccacagtccttagcggatcacgca
ctggagcccttcaaccagaccaatgtcctgtcagacttcntccctatttgggtggatcgt
atggccatgaacctccggcccgtctccttccatacccacctggacaacccgtctgtaggg
ccccacctggacaacccatctgtagggccccacctggacaacccgtctgtagggccccac
ctggacaacccatctgtagggccccacctggacaacccctctgtagggccccagttagac
ccagcaacaccagggactagaccccagtgcccccaggacagaggtctaggcctgtacaat
aacactggggatgggacctacctccagaagaccagagatggaccccgggaaccccgggaa
ccccgggagggagtcagctttaagaagaagaggtccaaatcagccgacatgtggagagaa
cacagtctggagttcagtctgtcagacctcagccaggaacatctcaccagcacagaggag
atcatcgacaccgaggaggcagacgacagggacttccctgattgtgaaggcctgctgggg
ctcgtgtccccagagggtctggagggtgtggacgctgctggcagggccaactccctggat
cagctgtatggcggtcagaagaccccaactcgccggcccgtggcacgctatgctaagtgg
caccatgacgctaaccgcgaagcccgggagggagaggacgataagatgctgtctccgtcg
gaggaggatgggaactcgtacggagcgtacactctgccctgtcgacgctcacactgcctg
tctgagggcctgaccaatcaccaggctgcctcctgtaacaccatgcagggccgcagagca
cagaccatacaggatgtgactgctggagagggcagtgagtacgaggacagtggcatcgac
ggggtgacggcttcgggggcggagcatcagtcccggcgctataagaccatgtctatgtcc
ttctccgtgtgctcggcggcggggcggagcctgttcgctggcagtgacagcggaagcagc
agcgggggaggagccagtgagggggtccagggggtctacgagaacttcagacaggagttg
gagatgagctcgtgtcagacagagagtctggaggaggcggggtcagccctgagtgacgaa
cagagcgtcatgagctcagcctaccaatcagatcccctgctcagcgttgcccagggaacc
gtgaggaaggcgggccgtctggctgtcaagaacttcctggttcacaagaagaacaagaag
gtggagtcggccaccaggaggaagtggaagagctactgggtctgcctcaaaggatgcact
ctgttcttctacgagacagacgggcggtcggggatcgaccacaacagtgctcctaaacat
gcggtgtgggctgagaatagtattgtccaggccgtccctgaacaccccaagaaggacttt
gtcttctgcctcagcaactctctaggagatgcttttctcttccagtcctgcagccagacg
gagctggagaactggatcacggccatccactcggcgtgcgcggcggccgttgccaggcag
catcaccgggaggacacggtgcgtctgttgagggtggagattaagaagctggagcagaag
atcgacatggacgagaagatgaagaagatgggagacatgcagctcagtgccgtgaccgat
accaagaagaggaagaccatactggaccagatctttctgtgggagcagaacttggaacag
tttcatatgggtttgttccggtaccggtgttacctggccagtctgcagggaggggagctg
cccaaccccaaacgcctgctagccgtagcctccagacccaccaaactggccatgggacgc
ctcggaatcttctctgtatcgtcctttcatgcgctggtggcagctcgtacagagagcggg
gtgaggagacgtacccaggccatgtctcgttcctcctcgtctaaacgtaagagcaggttc
tcctctctgtggggcctggacactacttccaagaagaagactcaccccaccatcaaccag
gtgtttgctgatggggaggagccagtgaaaaagcctctggacgggatctatgatgtggac
actgccagggagagagggaagagtcatgaggggacagtgaagagtcttcctcaggtcaac
tcagacagtcacatgacagacagtgatatctgggtgcctgatcacctgaccccgtcctgg
gtgtgtcttcctaacgaccagcctgtcctcgccatcatccagcctggagagtctgctctg
gacgttctggagaccatctgcaaggcccaccggctggatcctgccaaacattacctccgt
ctcaagttcctcatcgaaaaccaagtccagttctacatccctaaaccggaggaggacgtg
tgtgacttgctttataaagagatagagctgggctccaaaataaccaaagtcatccagttc
gacagggatgagtcctgtatgattggctacgggttttccatctcagtggtggaggaggat
tcagtgcagcagctctacattaccgatgtgaaggcgggaggattagccttcgctaaaggt
ctgaatgcgggggatgagatcttgcagctgaatgggaaagactcgtgcagattgaagttc
ggggacatgaagggggcgttttcccaggcctctctgtccctgaccgtgaacactctgccc
tccacggaccgacgacaaatctgttacctgcccccccgacgctctgacgcacaggaagtc
ctccacacagacatcttctctatgaaccaggaggagattctggatgacggggttggtctg
acgctggagagttctggagacagcctggacgacgactctgagagcttcagcgaggcagac
caatgcagaaagagtacggagcaggttgcagcattctgccgcagtctccatgacatgaat
ccgtctgagtgtgcgacaagttcctcctcccccagcctggagtcgcccgtccctccgccc
gccaccggcacccgtcagctctctgacgccgacaagctacgcaaagtcatctgtgagctg
gtggagaccgaacgcacctatgttaaagatcttcattgtctcatcgggaggtatttaacc
ccactacagaaggagacctgcctcactcaggatgagctggacattctggttgggaacctg
cctgagatggtggagttccaggtggaattcctgaagactctagaagacgggaccagattg
gtgccagacctggagaagctggagagagtggaccagttcaagaaaatcctcttctctcta
ggaggttccttcctgtactatgcagatcggtttaagatctacagtgcgttctgcgccagc
cacaccaaagtccccaaggtgctcgtgaaagctaagaccgatgcagacttcaaggcgttt
ctggaagagaggaacccgaaacagcaacactcctcaaccctggagtcctacctgatcaaa
cccatccagagagttctgaagtacccactactactgagagagctgtactcactgacggac
ccggacagtgaggaacactatcacctgaatgtcgctatgaaggccatgaacaaggtggcc
agtcacatcaatgagatgcagaagatccacgaggagtttgggttggtgtttgaccagctc
atagcggagcagagtggagacaagaaagaggttgctgatctgtcgatgggggacttgctg
ctccacaccagtgtagcctggatcaaccctccctcctccctgggcaaatggaagaaagaa
ccccaactggctgcattcatcttcaaaacagccgtggtgtttgtgtgcaaggatggctcc
aagcagaagaagaaaatgggtggctcccatcgagtgtcgtcagtctcgtctgaagacaag
gacccattccgcttccgtcacatgatctccacagacgcgctccaagtccgagccctcaat
aaccaaggtacagttcaatatagagccctcaataaccaaggtacagttcaatatagagcc
ctcaataaccaaggtacagttcaatatagagccctcaataaccaaggtacagttcaatat
agagccctcaataaccaaggtacagttcaatatagaggcctcaataaccaagaaggagag
gcctctgccgtatgtgagatcgtccacgtcaagtccgagtcagaaggacggccggagagg
atattccacctgtgctgcagttctgtggacagtaagaaggacttcctgaagacagtccac
tccatcctgagagataaacaacgacgccagctgatgaagacagagtctctaccccccaac
caacagtatgtccccttcggaggcaaacgcctctgtgccctgaaaggagccagacctgcc
atgaacagagcagtgtcagacccggcccgaaccttgggccggaggaaactggtgaggaac
cgtttcactatcgacacagacatcgtcttcgacggcgagccggaccaagagtcccctctg
tctccactgtcccctgaagagcctgagggacagggacaaaaggaaggacagggacgggcg
gaggtgcaggcaggggatacggaccgctgggtggaggagcagtttgacctggagcgctac
gaggaggagcaggaggcgcaggtgaaaggaggaggggacgttaaagagacagacatcctt
agtgacgatgacgatttctgccagtctgtcggaggagcctccgctgaacctctatccacc
acagacctagaagggcccttaggggccctgtccatgggagaagaatgcaaagaggtgggc
cctaaacacctccagccccagggaggcacggggaccactaccccagggatgaggctctca
cacccggggaagcagtgtgctctggttggggtgagcgtggatgaccaggggtctaagggg
gaggctgaggacatctgggtacgcagggaggactgtccctcggactcatcagagctagac
tag
DBGET
integrated database retrieval system
