Oncorhynchus keta (chum salmon): 118383869
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Entry
118383869 CDS
T09424
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58 isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04622
RIG-I-like receptor signaling pathway
oke04623
Cytosolic DNA-sensing pathway
oke05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118383869 (rigi)
04623 Cytosolic DNA-sensing pathway
118383869 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118383869 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oke04054
]
118383869 (rigi)
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118383869 (rigi)
Pattern recognition receptors [BR:
oke04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
118383869 (rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
PhoH
IstB_IS21
SNF2-rel_dom
AAA_19
FcoT
ATP-synt_ab
Gasdermin_C
AAA_25
Motif
Other DBs
NCBI-GeneID:
118383869
NCBI-ProteinID:
XP_052369813
EnsemblRapid:
ENSOKEG00005029628
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MYEMEKSNLQSYSKYVIHILRPSYVKGFMTTYLQPEVAERILSEESKSVTAAAQVFLDHV
CLLDDLGWYQALLDALEAEDYKGLCEALKGWDFQTLESTKLHRVLLDRIEPRFTKMIRPR
DLLLHLGDCLRQRECEEILAIENLKGPIAAAERLTDCLKRSDKQNWFKLLKSALYSCELI
DALQLLDPDTESSMSKMDVGDEEEGETVTTVSFQYTEQSDDDDGMLMSSNPLTPSETPPT
SATGANSGVGEVQKGGEKRMREEEERGGGEKSKGGEKKMREYQRELAEPVFQGKNTVICA
PTGCGKTVVALAICEQHLKVKGKGAKVVFMATKVDVFNQQYKLFQEHFQEKDPDIRIDGL
CGNQGDQLSMKVVMENNDIIVLTPQILVNAMAQGEVPSLSCFSLLILDECHNTTGKHPYN
IIMTSYLDAKLSTEQNGQHLPQIVGLTASVGIGSFKNQSEAENNICQLCASLDSRIISTI
HTNTDELQSYVHTPDKEFFLVQKRHNDPFIRIIHDIMAKIEGLAKTVYNIESLSSIENRD
YGSQKYEQWIVDVQKKCRVLQLKDQEEESRVCRALYNYTEHLRKYNDALIINEDARTKDA
LEYLSSFIQQVKNAGHDETERQLTAYFDGQQGVLRGLSSGGQKENPKLDTLQYILEEQYR
QNDETKSVLFVRTRALADALKSWMEESDSLKFLKPGVLIGRGRKSSQLTGSGMTLNSKKG
VLDSFKSFDNQSKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSKCI
LVSDKKDRIDKEKHNMEKEKIVERAIRNLQDTPTEMLRKMEVFQRGDKVCRDMVKMVPER
PRTEGSYQLLCSKCKKHSCYTDDIRVLQDSHHIVLDPTLFSRARTEPHPKPKGFMGLVKT
RKLFCHCGLDWGIVASYLTIQNLPVLKIESFVVKNCVTEQQRYYRKWRDVTFSMKTFELT
DIADSWNPLLEDQ
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagatggagaagagcaatctacagagttatagtaaatacgtgattcatattttg
cgaccgtcttacgtcaaaggcttcatgacaacttacctgcaaccagaggttgcagagagg
atcctatcagaggagagtaagtcggtgacggcagcagcccaggtgtttctagaccatgtg
tgtctcctggacgacctgggatggtaccaggccctgctagatgccctggaagcagaagac
tataagggtctgtgtgaggccctgaaggggtgggactttcagaccctggagagcaccaag
ctacacagagtgcttctggaccggatagaacctcgcttcaccaaaatgatcagacccaga
gacctgctgctacacctgggagattgtctcagacagagagagtgtgaagagatactggcg
atagagaacctgaagggacctatagcagcagcagagaggctgactgactgtctgaagaga
agtgataaacaaaactggttcaaactgctgaagtcggcgctgtactcctgtgaactgatt
gatgccctgcagctactggatcctgacacagagtcatccatgtcaaagatggatgtgggt
gatgaggaggagggtgaaaccgtgacgactgtctccttccagtacactgagcagtctgac
gatgacgatgggatgctgatgagcagcaatcccttgacaccctctgaaaccccgcccacc
tctgcaacaggagccaatagtggtgttggtgaagtccagaaaggaggagagaagaggatg
agagaggaggaggagagaggaggaggagaaaagagtaaaggaggagagaagaaaatgaga
gagtatcagagagagctggctgaaccggtgtttcagggcaagaacacggtcatctgtgcc
ccaaccggctgtgggaagacggtggttgccctggcgatctgtgagcagcacctgaaggtt
aagggtaagggggcgaaggtcgtcttcatggcaaccaaggtggacgtcttcaaccagcag
tataaactgttccaggaacatttccaagagaaagaccctgacatcaggatcgacggcctt
tgcggtaaccagggcgaccagctgtcgatgaaggtggtaatggagaacaatgacatcatc
gtcttaacccctcagatcctggtgaatgccatggcccaaggggaggttccctctctctcc
tgcttctctctgttgattctagatgagtgtcacaacaccacagggaaacacccctataac
atcatcatgacgtcatacctggatgccaagctcagcacggagcagaacggacaacacctg
ccccagattgtgggtctgacggcctcagtggggattggctcgttcaagaaccaatcagag
gctgagaacaacatctgtcagctgtgtgccagtctggacagccgcatcatctccaccata
cacacaaacactgacgagctacagtcctacgtgcacacacctgacaaagagttcttcctg
gtccagaagagacacaatgaccctttcatcagaatcattcatgacatcatggctaagata
gaaggactggccaagactgtctacaacatagagtccttgtcatccatagagaatcgtgac
tacggcagtcagaagtatgaacagtggatcgttgatgttcagaagaaatgcagagttcta
cagctgaaagaccaggaggaggagagtagagtctgtagggctctgtacaactacactgag
cacctgaggaagtacaacgatgcgttgatcatcaacgaggatgccaggactaaggatgcg
ctagagtacctgtcatctttcatacagcaggtgaagaacgcaggtcacgacgagacggag
agacaactcaccgcttacttcgatggtcagcagggtgtactgcggggtttgtccagcggg
gggcagaaggagaatcctaaattagacacgttacaatacatcctcgaggaacagtatcga
cagaatgatgagaccaagtctgtgctgttcgttaggacacgggccctcgcagacgccttg
aagagctggatggaggagtctgactctctgaagttcctgaaaccaggagtactgattggg
agaggacgcaagtccagccagctgactggctcaggcatgacgctgaactctaagaaaggt
gtgctggattcctttaagagttttgacaatcaaagcaagatcctgatcgctacctcggtg
gccgacgagggcatcgatatcccacaatgcaacctggtattgatgtacgaatacgttggc
aatgtggtcaagatggtccaagtcagaggtcgcggcagggcccagggcagcaagtgtatc
ttggtgtctgataaaaaggacaggattgataaagagaaacataacatggagaaggagaag
attgtagagagggccatcagaaacctacaggacacacctactgagatgctccgcaagatg
gaggtgtttcagcgtggggacaaggtgtgtcgtgacatggtgaagatggtaccagagaga
ccccggactgaaggcagctaccagctcctctgctccaagtgtaaaaaacacagctgttac
acagacgacatcagagtactgcaggattctcaccacatcgttttggaccccactctgttc
tctcgagctcgaacagaacctcaccctaaacccaaaggtttcatggggctggtgaagacc
aggaagctgttctgtcactgtggactggactggggcatagtggcctcatacctgaccata
cagaatctgcctgtgttaaagatagagagctttgtggtgaagaactgtgttaccgagcaa
cagaggtactacagaaaatggagagacgtgaccttttccatgaagacctttgaacttaca
gacatagctgatagctggaatccattgcttgaagaccagtaa
DBGET
integrated database retrieval system
