Oncorhynchus keta (chum salmon): 118384393
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Entry
118384393 CDS
T09424
Name
(RefSeq) sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oke04040
]
118384393
Ion channels [BR:
oke04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118384393
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
118384393
NCBI-ProteinID:
XP_052374551
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Position
5:6653049..6692804
Genome browser
AA seq
1854 aa
AA seq
DB search
MPTRKITLLEAWERNRTFRRKKAKDLKICPHLLPLLRDPSVVASLTQQNAKMVALLPPTG
TEVFRHFTLESLVEIDRRMAKEAKEQERQKTLNIEVAEQDLPKPAVDLETGKILPFIYGD
PPCELFNTPLEELDPFYESHKTFIVINKRNTIFRFNAEPACYILTPFSILRRGSIKILMH
SLFSMFIMLTVVSNCAFMTMSDPPAWSKTVEYVFTGIYTFEATIKVLSSGFCVGDFTYFR
DPWNWLDFILISMTYLTEFVDLGNVSVFRMFRVFRALKLITVIPGLKTIVGTLIMSVKKL
ADVMIITVFCLAVFAIIGLQMFMGILKQKCVHWPPGEWHFNSTYMGNIAMANGLNDVMGY
NDTNTGNSTWDFKAYINDKANHYFLPGMLDPLLCGNTSDAGICPEGYTCMKAGGNPNYGY
TSYDNFGWAYLALIQLMTQDFWENLLKLTLRSAGKTYMIFFVVVIFLCSFYLINLILAVV
AIAHAEQNEATRAEAKEKEEEYAMIMVQLKERREAEVKERASRPKGSKDQLEVAGLQKKT
PSSPSVYSQDAMDDLEEELRPCPPCWYKCSDVFLKWNCCVPWVTFKKWVYFIVMDPFMDL
VITICIVLNIMFLAMEHYPMTIEFEEVLSVGNLVFVGIFTAEMVLKIIAMDPYYYFQVGG
NIFDSIIVATSLMELCLADVEGLAVLRSFRLMRVFKQAKSWPTLNMTFKIIGNSMGTLVN
ITLVLAIIIFMFAAGGMQLFGKSYKDCVCKISLDCELPRWHMHDFFHAFLLIFRVLCGEW
IETMWECMEVAGQGICLVFFMMVMVIGKLVVLNLFLTFLLSSFSRYNLAAPEEDGEMNNL
QIATSRITRGMDWVKAYVIKQICITIGNQPKEDGNGADGNGGSNGDVDGLPKDSLALKNI
NSSDNPKADLELKMLDDVNPSGFLANANLTLDVPIAKMESDDDEDDSSEVKGEGANEDAK
RRKPIAQDNASLICRTSVEVKKKEANPTSPENCWTATCIGRCPCLDCDITTGKGKTWWNF
RKTCILIVEHNYFQSFIIFMILMSSGALAFEDIHIEQRRTLKVILEYADQVFTYVFIIEM
LLKWVAYGFQAYFTNAWCWLDFLIVNVSMISLSAKILGYAELGSIKSLRKLRALRPLRAL
SRFEGMKVVVNALVGAIPSIVNVLLVCATFWLIFSIIGVNLFAGKYYYCFNTTSEEMFSA
DVVNNRTECVQLIEDNADVRWMNSKINFDNVAMGYLSLLQVATFKGWLGIMYSAVDSRIV
GDQPMYEDNVYMYIYFVMFTIFGTFVMLNLFIGVIIDNFNQQKKKFGGKNIFMTEEQNKY
HNAMKKLGSTKLQKPIPRPKNKFAGIVYDLINQQFFEIFIDVLICLSMVTMMADTDDQSE
EKDSILFFINLVFIFIFIAECVLKLIGLRQYYFTVGMNILDFVVVVLSILGLLLADLIEK
YFVSPTLFRVVRLARIGRVLRLIRGAQGIRTLLFSLRMSLPAIFNIGLLLFLVMFIFAIF
GMSNFAYVKKEVGIDDMINFETFGNSIICLFMITTLVGWDSVLSPMMSSTPPNCDPYFEN
PGTDVRGNCSSLGWGILFICSYIIMCFFLVVNMYIAVILENFNVVIEESGNPLCEEDFEM
FYETWEKFDPDASQFIAYNILSEFCDTLKNPLRIPKPNAIKLITMDLPIVPGDKIHCLDI
LQALTTEVLGESGEMDAMKESMEEKFMAKNPFKVSFKPITTTLRRKQDEVAAVVIQRAYC
KHLLRSSMKLASHKYHEKKELTKEDEAPPEQEGMIAIRMSKLYESQQSLGVDETVVDMDS
CVKRERKELTATQPPVVTTETPPPVELQNEIISHSAPFVIPASNHNSQQKESHV
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccgaaagataacactgctggaagcctgggagagaaacaggacctttcggagg
aagaaagctaaagacctgaaaatatgtccccatctactcccactgctgagagaccccagt
gtggttgcatccctcacccagcagaatgccaagatggtcgccctgctccctcccacaggc
accgaagtgttccgccacttcacccttgagtcgctggtggagattgataggcggatggcc
aaggaagcaaaggagcaggagagacaaaagaccctgaacattgaggtggcagagcaggac
ctgccaaagccagccgtcgacctggagaccggcaagatcctgccgttcatctacggagac
ccgccatgtgagctgttcaacacacctctggaggaactggatcctttctacgaatcacac
aaaacctttattgtcatcaacaaaaggaatacaatcttcagattcaatgctgagcctgcc
tgctacattctgactcccttcagtattctcaggagaggatccatcaaaattctcatgcat
tcattgtttagcatgttcatcatgttgacagtcgtgtccaactgtgcgtttatgacgatg
agtgaccctccggcatggagtaaaactgttgaatatgttttcactggtatctataccttt
gaggcaacaattaaagtgttgtccagtggcttctgtgttggagatttcacatactttcga
gatccatggaactggctggatttcattttgatcagcatgacgtacctcacggagtttgtt
gacctgggcaacgtgtctgtcttcaggatgttccgtgtattccgagcccttaaattaatc
actgtaattcccggtctgaaaaccattgtgggcactctgatcatgtcagtgaagaagctg
gctgatgtgatgatcataacagtgttctgcctggctgtgttcgctataatcggcctgcaa
atgttcatgggaatcctgaagcagaagtgtgtccactggccccctggtgaatggcatttc
aactccacctacatgggcaacatcgctatggctaatggtttgaatgacgttatgggctac
aatgacacgaacaccggcaacagcacatgggacttcaaggcatacatcaacgataaagca
aaccattacttccttcctggaatgttagaccctcttctttgtggaaacacttctgatgct
ggaatatgtcccgaaggatacacgtgtatgaaggccggagggaatcccaactatggatac
acaagctacgacaattttggatgggcctaccttgccctaattcagctcatgacacaggac
ttctgggaaaatctactcaagctgactcttcgctcagcagggaaaacctacatgattttc
tttgtggtggtgatcttcctgtgctcgttctacctgatcaacctgatcctagctgtggtg
gccatagcgcatgctgagcagaacgaggccaccagggccgaggccaaggagaaggaggag
gagtatgccatgatcatggtgcagctgaaggaaaggagagaagcagaggtcaaagagagg
gccagtagacccaaagggagtaaggaccagctggaagtagcaggccttcagaagaagaca
cccagttcacccagtgtctacagccaagatgccatggatgatttggaggaggaactgagg
ccttgtcctccttgctggtacaagtgttcagacgtcttcctgaaatggaactgctgtgtg
ccctgggtgactttcaagaagtgggtgtacttcatagtgatggacccattcatggacttg
gtcatcaccatctgcattgtactcaacatcatgttcttggccatggagcactaccccatg
acaatagagtttgaagaagtgctgagtgtggggaacttggtcttcgtaggaatcttcaca
gcagagatggtgctgaagatcatcgccatggatccgtactactacttccaggtcgggggg
aacatcttcgacagcatcattgtggcaaccagcctgatggagctgtgcctggccgacgtc
gagggtcttgccgtgcttcgctccttccgtctgatgcgtgttttcaagcaggccaaatcc
tggcccacactcaacatgaccttcaagatcatcggtaattcaatgggcaccctagttaac
atcactctggttctggccatcatcatcttcatgtttgccgcggggggcatgcagctcttc
ggcaagagctacaaagattgtgtctgcaagatctccttggactgcgagctgccccgctgg
cacatgcatgacttcttccacgcttttctcctcatcttccgggtgctgtgcggagagtgg
atcgagaccatgtgggagtgcatggaggtggccggacagggcatttgtctcgtcttcttc
atgatggtcatggtcatcggtaaactagtggtgttgaacctcttcttgacctttctgctg
agctcgttcagccgttacaacctggcggctccagaggaggacggggagatgaacaacctg
cagatcgccaccagcaggattaccaggggcatggactgggtcaaggcatacgtcatcaag
cagatctgcattaccataggcaaccagcctaaggaggatggaaacggggctgacggtaat
gggggtagtaatggggatgtggacggcctcccaaaggacagcttggctttgaaaaatata
aattccagtgacaacccaaaggctgatttggagctcaaaatgctggacgatgttaaccca
agtggatttcttgcaaatgcgaatttgaccctggatgtacctattgccaaaatggagtct
gatgatgatgaggatgacagctctgaagtgaaaggagaaggcgcaaatgaggatgctaag
cgaaggaaacctattgcacaggacaatgcctctttgatctgcaggacaagtgtggaagtg
aagaaaaaagaggcaaaccccaccagccctgagaactgctggactgcgacatgtattgga
cgatgcccttgccttgattgtgacatcaccacagggaaaggaaaaacttggtggaacttc
aggaagacatgcatcctcattgtggagcacaactactttcagtcctttatcatcttcatg
attctgatgagtagtggagctttggcttttgaagacatacacattgaacaacgcaggacc
ctaaaagtcatcctggaatatgctgatcaagtcttcacctacgtgttcatcattgagatg
ctcttgaagtgggtggcttacggattccaggcctacttcacaaatgcatggtgctggctg
gacttcctcattgtgaatgtgtctatgattagtttatcggctaagatcctgggctacgct
gaacttgggtcaatcaaatctcttcgaaagttacgggctttacggcccctccgagccctg
tccagatttgagggaatgaaggtggtggtgaacgctctggtgggggccattccttccatt
gtcaatgtgcttctagtgtgcgccaccttctggctcatcttcagcatcattggagtcaac
ctgtttgctgggaagtactactactgcttcaacaccacgtctgaggagatgttctccgct
gacgttgtgaacaacaggaccgaatgcgtccaactgatagaggataatgccgacgtgcgc
tggatgaactcaaagatcaactttgacaacgtggccatgggctacctttccctcctgcaa
gtagcaacatttaaaggatggctgggtataatgtatagcgctgtggattcacgtattgtg
ggagaccaacccatgtatgaggataatgtttacatgtacatctactttgtcatgttcacc
atctttgggaccttcgtcatgctgaatctcttcattggtgtcattatcgacaacttcaac
cagcaaaaaaagaagtttggagggaaaaatattttcatgacagaggaacagaataaatac
cacaatgccatgaaaaagctcggttccacgaagctacagaaacccattcctagacccaag
aacaaattcgcaggcattgtttatgacctgatcaaccaacaattcttcgagatcttcatt
gatgtgctgatctgcctcagcatggtaacgatgatggcggacacggatgaccagagcgag
gagaaggatagcatcctcttcttcatcaacctggtgtttatcttcatcttcatcgcagag
tgtgtcctcaagttgatcggattgcggcaatattattttaccgtcggaatgaacattttg
gattttgtcgtcgtcgttctctccatccttggtttactgctggcagacctcatagagaag
tattttgtctcacctacccttttccgtgtcgtaagactggccaggattggtcgagttctg
agactcatccgaggagctcaaggcatccggacactgttgttttccctgaggatgtcactt
ccagctatcttcaacattgggctcctgctcttcctcgtcatgtttatcttcgccattttt
ggaatgtccaactttgcgtatgtcaaaaaggaggtcggaatagacgatatgatcaatttt
gaaacttttggcaacagtatcatttgtctgttcatgatcacaaccttagtcggttgggac
agtgtcctctcacccatgatgagtagtacacctccgaactgtgacccgtactttgaaaat
ccaggcacagatgtaagaggcaactgcagcagccttggttggggaattctttttatctgc
agctacatcatcatgtgtttctttcttgtggtcaacatgtacattgccgttattctcgag
aacttcaatgttgtcatcgaggagagcggcaacccgctgtgtgaggaagactttgagatg
ttctatgagacctgggagaagttcgaccctgacgcgtcacaattcatcgcctacaacatt
ttgtcggagttctgtgacacgcttaaaaacccgctcaggatcccaaaacccaacgcaatc
aagctgatcaccatggaccttcccattgtccctggggataagatccactgtctggacatc
ctgcaggcgctgaccacagaggtgctgggagaatcaggggagatggatgccatgaaggag
agcatggaggagaagttcatggccaaaaacccctttaaagtgtcattcaagccaatcacc
accaccctgaggcgaaagcaggacgaggtagcagctgttgttattcagagagcctattgc
aagcatctgctgagaagttcgatgaaactcgcttcccacaagtaccatgagaagaaagag
ttaaccaaggaggacgaagcgccgccagagcaggaaggaatgattgccatcaggatgagc
aaactgtatgaaagccaacaatcactcggagtggatgaaaccgttgtagatatggattct
tgtgtgaaacgggagagaaaagaactgacagcgacacaacctcctgtggtgactactgaa
acgccgccgcctgtggagcttcagaacgagatcatctcgcactctgccccctttgtcatc
ccggcctcaaaccataactcacagcagaaagagtcccatgtttga
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