Oncorhynchus keta (chum salmon): 118384491
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Entry
118384491 CDS
T09424
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118384491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118384491
Spliceosome [BR:
oke03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118384491
Complex C
U5 SnRNP specific factors
118384491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
118384491
NCBI-ProteinID:
XP_035626971
LinkDB
All DBs
Position
5:complement(10181922..10199966)
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLETDDRDADEADEDEDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTSGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGDINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNSQRSFVEFILEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIIQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtatgacgagtttgggaactacattggtccagaactagactctgac
gaggatgatgatctggagacagacgacagagatgcggatgaggctgatgaggatgaggat
gatgagccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacggaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaacgtcaccctgtgtggccacctgcaccacggcaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctgttcactgaacaggagcgaggggttggtatcaag
agcacccctgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgacatcaggcatccgactctcc
gacggcatcgtgcttttcatcgacgcagcagaaggggtgatgttaaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccatcaccatctgcatcaataaggtggaccgc
ctcatcgtggagctcaagctgccccctacagacgcctactacaaactacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagatgagaacctggtggtgtctcct
ctcctggggaacgtgtgtttcgccagctctcagtactgtgtttgcttcaccctgggctcc
ttcgcaaagatctactccgacacctacggtgacatcaactacacagagtttgccaagagg
ctgtggggagacatttatttcaaccccaaaacgcgcaggttcactaagaaagcccccacc
agtaactcccagcgtagctttgtggagtttatattggaacctctgtacaagatcctatct
caggtggtgggtgactgtgacacgtctctgcctcgggtgctggatgagttggggatccac
ctggtcaaagaggagctgaagctcaacatcagacctctactcaggctggtctgtaagcgc
ttcttcggagagttcactggctttgtggacatgtgcgtgcagcacatcccctcaccacag
gggggtgccaagaacaagatagagcacagctacactggaggactggactcagacctgggg
gaggccatggcagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccacgcgttcggccgggtgctgagcggtaccatccag
gcgggccagccagtcaaggtgctgggcgagaactacactctggaggacgaggaggactcg
caggtctgcacggtgggacgcctctggatcaacgtcgccaggtaccagatagaggtgaac
cgtgtgcctgctggcaactgggttctcattgagggctgtgaccagcccatcgtcaagaca
gccaccatcaccgagcccagaggaaacgaggaagcccagatcttccggccgctcaagttc
aacacggcgtctgtcatcaagatcgctgtggagccagtcaacccgtcagagctgcccaag
atgttggatggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggag
gagtcaggggaacatgttatcctgggtactggggaactctacctggactgtgtcatgcac
gacctgcggaagatgtactccgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagacggtagtggagacgtcgtctctcaagtgctttgccgagacgccgaacaagaag
aataagatcaccatgattgccgagcctctggagaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaagctgggagagtttttccagaccaagtat
gactgggatctgctggctgccaggtctatctgggcctttgggcccgacaccaccgggcct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggtt
aaggacagcatcatccagggcttccagtggggcaccagggaggggcctctgtgtgacgaa
cctatcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtgacccaggacgccccc
atccccgggtctcccctctacaccatcaaggccttcatcccagccattgactcgtttggc
ttcgagactgacctgagaacacacacacagggccaggctttctccctgtccgtcttccac
cactggcagattgtccctggtgaccccctggacaagagcattgtgatcaggccgctggag
ccccagcctgcccctcacctggcaagagagttcatgatcaagacccgccggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttctttgacgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
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