Oncorhynchus keta (chum salmon): 118384659
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Entry
118384659 CDS
T09424
Name
(RefSeq) low-density lipoprotein receptor-like isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118384659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oke04131
]
118384659
Membrane trafficking [BR:
oke04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
118384659
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
118384659
NCBI-ProteinID:
XP_035627256
EnsemblRapid:
ENSOKEG00005045057
LinkDB
All DBs
Position
5:19395867..19411015
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AA seq
880 aa
AA seq
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MGRLLCVLLVFLACCVVQTNAETICGTRQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CSARTCGTTEFSCGGHLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNKFRCSNSQCV
SASFVCDEELDCDDGSDEASCPPTTCSSTSFQCNNSVCVPRLWACDGDADCSDGSDEWPQ
NCGTRAPGGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEMGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKIGYECQCPTGYYLMDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PHLKNAVALDMDMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFRNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDDIVWPNGITLDLLNQRLYWVDSKLHTLSSINVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPAAPVKPIV
PASNPPPAPVRTSTAPPARTTTKAPIITTTVTPAPPRTTKPVPRNPQPAQPDRPRIPQAH
TTTVPQVTTQEIRHEFAAIPTAPSTPAALYIALPIAIVCLVAFGAMLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgctgtgcgtgctgttggtgttcctggcttgctgtgttgtccaaacaaac
gcagagacaatatgcggtaccaggcagttcctgtgtgggaacgggaagtgtattacgctg
agatgggtgtgtgatgacacagatgattgtggagatggaactgacgagctccccggaacc
tgctcggccagaacatgcggaaccacagagttcagctgtggtggacatctgaaccagtgt
gttcccagtacatggctctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccgctgcagtaacagccagtgtgtg
tcggcctcttttgtgtgtgatgaggagttggactgtgatgacgggagcgacgaggcttcc
tgcccacccaccacctgtagctccacctccttccagtgcaacaactctgtgtgtgtgccg
cgcctgtgggcctgcgacggagacgctgactgctcggatggctctgacgagtggccccag
aactgtgggacgcgagcccctgggggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggtcgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagatcggctatgagtgccaatgccccaccggc
tactacctgatggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagatatc
tgcagccagatctgtgtcaatcatatgggcagctacaagtgtgagtgtgaggagggctac
caggttgacccagccactaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccacctgaagaatgcagtggctctggacatggacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
caacacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctccgtgtcaaccgcc
aacgggagccgtcgcaagactctcttccggaatgacctggccaaaccccgcgctattgtg
gtcgacccccacagcaacttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacgacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcaacgtacagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggcg
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcagctccagtcaagcccattgtt
cccgcctccaaccccccaccggcacccgtccgcacctccactgcacctccagcccgcacc
accactaaggcccccatcatcactaccacagttacgcctgcgcctccccgcactaccaag
cctgtgccacgcaacccccagcctgcacagccagatagacccaggatcccccaggcccat
actaccacagtgcctcaagtcaccactcaggagatccgccatgaatttgctgctataccc
acagccccttcaacccctgcagctttatacatcgcgctgcctatagccattgtgtgtctg
gtggcctttggtgccatgctgctgtggaggaactacaggctgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagatggctactcctacccaccgagacagattgtgagtcttgatgatgaggct
tga
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