Oncorhynchus keta (chum salmon): 118385316
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Entry
118385316 CDS
T09424
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04010
MAPK signaling pathway
oke04137
Mitophagy - animal
oke04141
Protein processing in endoplasmic reticulum
oke04210
Apoptosis
oke04217
Necroptosis
oke04621
NOD-like receptor signaling pathway
oke04622
RIG-I-like receptor signaling pathway
oke04920
Adipocytokine signaling pathway
oke05132
Salmonella infection
oke05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118385316
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118385316
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118385316
09143 Cell growth and death
04210 Apoptosis
118385316
04217 Necroptosis
118385316
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
118385316
04622 RIG-I-like receptor signaling pathway
118385316
09152 Endocrine system
04920 Adipocytokine signaling pathway
118385316
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118385316
09171 Infectious disease: bacterial
05132 Salmonella infection
118385316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118385316
04121 Ubiquitin system [BR:
oke04121
]
118385316
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118385316
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
118385316
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
118385316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-RING_4
zf-C3HC4_2
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
118385316
NCBI-ProteinID:
XP_035628259
LinkDB
All DBs
Position
6:27502797..27545354
Genome browser
AA seq
526 aa
AA seq
DB search
MARISLPSLDSSLPGIPQSVLAVSMEAKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTS
SGPKPCEACRQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCISEGCSWTGCIKEYEA
QHEGKCEYERVPCETCQVLILRSEKERHNERECEARTLNCKYCKVSFNFKEIKAHDEICQ
KFPMQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKVVIDNGKHSDHEQTSVMEH
MRLILAMMSLVRLQRPEAPGLGEWQEDSGLGLYRAPEDGATATAATDGGGAAASGQTFGL
DHKVRALENIVCVLNREVERSSLTLEAFSRQHRLDQDKIENLGNKVRQLERTLTMRDLQL
AETDQTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLY
LNGDGTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTS
FQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcatatctttaccctctttggactcctcccttccagggataccccagagtgtc
ctggctgtttccatggaagctaagtaccaatgccagcagtgtcaccaggtcctgaggaag
ccagtccaggctcagtgtggacatcgtttctgtgtccattgtttcaaactgctcaccagc
tccggcccaaagccctgtgaagcctgtcgacaggaggagatatatgaggagccacagtcc
attctcaatagtaatgaggcttttccagacaatgcagctggtagagaaatcgccagcctg
cctgccaaatgtatcagtgagggatgctcttggactggttgcataaaagaatatgaggca
caacacgagggcaagtgtgagtatgagcgagtaccatgtgaaacctgccaggtccttatc
ctgcgcagtgaaaaagagaggcataatgagagagaatgtgaagcaaggacattgaactgc
aagtactgcaaagtctccttcaacttcaaggaaatcaaggctcatgatgaaatctgccag
aagtttcccatgcagtgcaaggactgtggaaagaaaaagatcccacgggaaaagtttcta
gatcacagcagatcctgtgccaagtctaagactgcatgtccgttcagtgaggtcggctgc
aaggttgtgattgataatgggaagcacagtgaccacgagcagactagtgtcatggagcac
atgcgtctgatcctggcgatgatgtctctggtgcggcttcagcgtccagaagccccaggg
ctgggggagtggcaggaggactctgggctgggcctgtaccgcgctcccgaggatggagcc
acagctactgcagccacagatgggggaggagccgctgcctctggacagacctttggtctt
gaccacaaggtgagagcactggagaatatagtgtgtgtattgaacagggaagtggagagg
agttctctcactttagaggccttctcacggcaacatcgtctagaccaagacaagattgag
aacctcggcaacaaggtacgtcaactagagcgtactctcaccatgcgggacctacaactg
gctgagacagaccagactctgagagaactccagttttgcacctttgatggtgtctttgtc
tggaagatcgccgacttctcacggcgccgccaggacgctgtggctgggcgaacacccgct
atgttctcaccagcattctactcaagtaaatatggctataagatgtgtctgagactgtat
ctgaatggggacggaacaggtcgagggactcacctttctcttttcttcgtggtgatgagg
ggcaagtgtgacgctctgctcaaatggcccttcagtcagaaggtgacactgatgctgctg
gatcagaataacagggagcatatcattgatgccttccggcctgatgtaagctccacctct
ttccagcggccaatcagtgagatgaacatagccagtggctgcccactcttctgcccattg
gctaaactggcaggcaagagctcctaccttagggatgacaccattttcatcaaggccatt
gtagacctcactggcctgtag
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