KEGG   Oncorhynchus keta (chum salmon): 118387519
Entry
118387519         CDS       T09424                                 
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
oke  Oncorhynchus keta (chum salmon)
Pathway
oke04010  MAPK signaling pathway
oke04137  Mitophagy - animal
oke04141  Protein processing in endoplasmic reticulum
oke04210  Apoptosis
oke04217  Necroptosis
oke04621  NOD-like receptor signaling pathway
oke04622  RIG-I-like receptor signaling pathway
oke04920  Adipocytokine signaling pathway
oke05132  Salmonella infection
oke05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oke00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    118387519 (traf2b)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    118387519 (traf2b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    118387519 (traf2b)
  09143 Cell growth and death
   04210 Apoptosis
    118387519 (traf2b)
   04217 Necroptosis
    118387519 (traf2b)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    118387519 (traf2b)
   04622 RIG-I-like receptor signaling pathway
    118387519 (traf2b)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    118387519 (traf2b)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    118387519 (traf2b)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    118387519 (traf2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oke03019]
    118387519 (traf2b)
   04121 Ubiquitin system [BR:oke04121]
    118387519 (traf2b)
Enzymes [BR:oke01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118387519 (traf2b)
Messenger RNA biogenesis [BR:oke03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     118387519 (traf2b)
Ubiquitin system [BR:oke04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    118387519 (traf2b)
SSDB
Motif
Pfam: TRAF-mep_MATH TRAF_BIRC3_bd zf-TRAF TRAF3_RING TRAF2_zf zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-C3HC4_2 zf-RING_6
Other DBs
NCBI-GeneID: 118387519
NCBI-ProteinID: XP_035631845
EnsemblRapid: ENSOKEG00005002343
LinkDB
Position
13:27765101..27788152
AA seq 522 aa
MALPSLDSSLQGIPKNVLAVSMETKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTSSGP
KPCEACQQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCFNGGCSWTGCIKEYEAQHE
GKCEYEHVPCEACQVLILRSEKERHNERECEERTLNCKYCKVSFNFKQIKAHDEICQKFP
MQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKAVIDNGKHSDHEQTSVMEHMRL
ILATSMVRLQRPEAPGLGEWQEDSGIGLYRAPEEGATASAATVGGGTAASGQTSGLDHKV
TVLENIVCVLNREVERSSLTLEAFSRQHRLDQDKMENLSNKVRQLERTLTMRDLQLAETD
QTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGD
GTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRP
ISEMNIASGCPLFCPLAKLTGKSSYLRDDTIFIKAIVDLTGL
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggccctgccctctttagattcctccctccaagggatcccgaagaatgtgctggctgtt
tccatggaaactaagtaccaatgccagcagtgtcaccaggtcctgaggaagccggtccag
gctcagtgtggacatcgcttctgtgtccactgtttcaaactgctcaccagctctggaccc
aagccctgtgaagcatgtcaacaggaggagatatacgaggagccccagtccattctcaat
agcaatgaggcttttccagacaatgcagccggtagagaaatcgccagcctgcctgccaaa
tgtttcaatgggggctgctcttggacaggttgcatcaaagaatatgaggcacaacacgag
ggcaagtgcgagtatgagcacgtaccatgtgaagcctgccaggttctcatcctgcgtagt
gaaaaagagaggcataacgagagagaatgtgaagaaagaacattgaactgcaagtactgc
aaagtctccttcaacttcaagcagatcaaggctcatgatgaaatctgccagaagtttccc
atgcagtgcaaggactgtggaaagaaaaagatcccacgcgaaaagtttctagatcacagc
agatcctgtgccaagtctaagactgcatgtccattcagtgaggttggctgcaaggctgtg
attgataatggaaagcacagtgaccacgagcagacgagcgtcatggagcacatgcgtctg
atcctggcgacgtctatggtgcggctgcagcgtccggaggccccggggctgggggagtgg
caggaggactctgggattggcctgtaccgcgctcctgaggagggagccacagcttctgca
gccacagttgggggcggaactgctgcctctggacagaccagtggccttgaccataaggtg
acagtgctggagaatatagtgtgtgtactgaacagagaagtagagaggagctctctcact
ttagaggccttctctcgacaacatcgactagaccaggacaagatggagaacctcagcaac
aaggtgcgtcaactagagcgtactctcaccatgcgggatctacagctagccgagacagac
cagactctgagggagctccagttctgcacctttgacggtgtgtttgtttggaagatagct
gacttctcacgccgccggcaggacgctgtggccgggcgaacacccgccatgttctcacca
gcgttctattccagtaaatatggctataagatgtgtctgagactgtatctgaatggggat
ggaacaggtcgagggacacacctttctcttttctttgtggtgatgaggggcaagtgtgac
gctctgctcaaatggcccttcagtcagaaagtgactctgatgctgctggatcagaataac
agggagcatattattgacgccttccgacctgatgtcagctccacctctttccagcggcca
atcagtgagatgaacatagccagtggctgcccactcttctgtccattagctaaactgaca
ggcaagagttcctaccttagggatgataccattttcatcaaggccattgtagacctcaca
ggcttgtag

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