Oncorhynchus keta (chum salmon): 118387519
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Entry
118387519 CDS
T09424
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04010
MAPK signaling pathway
oke04137
Mitophagy - animal
oke04141
Protein processing in endoplasmic reticulum
oke04210
Apoptosis
oke04217
Necroptosis
oke04621
NOD-like receptor signaling pathway
oke04622
RIG-I-like receptor signaling pathway
oke04920
Adipocytokine signaling pathway
oke05132
Salmonella infection
oke05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118387519 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118387519 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118387519 (traf2b)
09143 Cell growth and death
04210 Apoptosis
118387519 (traf2b)
04217 Necroptosis
118387519 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
118387519 (traf2b)
04622 RIG-I-like receptor signaling pathway
118387519 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
118387519 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
118387519 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
118387519 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118387519 (traf2b)
04121 Ubiquitin system [BR:
oke04121
]
118387519 (traf2b)
Enzymes [BR:
oke01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118387519 (traf2b)
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
118387519 (traf2b)
Ubiquitin system [BR:
oke04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
118387519 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
TRAF_BIRC3_bd
zf-TRAF
TRAF3_RING
TRAF2_zf
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
118387519
NCBI-ProteinID:
XP_035631845
EnsemblRapid:
ENSOKEG00005002343
LinkDB
All DBs
Position
13:27765101..27788152
Genome browser
AA seq
522 aa
AA seq
DB search
MALPSLDSSLQGIPKNVLAVSMETKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTSSGP
KPCEACQQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCFNGGCSWTGCIKEYEAQHE
GKCEYEHVPCEACQVLILRSEKERHNERECEERTLNCKYCKVSFNFKQIKAHDEICQKFP
MQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKAVIDNGKHSDHEQTSVMEHMRL
ILATSMVRLQRPEAPGLGEWQEDSGIGLYRAPEEGATASAATVGGGTAASGQTSGLDHKV
TVLENIVCVLNREVERSSLTLEAFSRQHRLDQDKMENLSNKVRQLERTLTMRDLQLAETD
QTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGD
GTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRP
ISEMNIASGCPLFCPLAKLTGKSSYLRDDTIFIKAIVDLTGL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggccctgccctctttagattcctccctccaagggatcccgaagaatgtgctggctgtt
tccatggaaactaagtaccaatgccagcagtgtcaccaggtcctgaggaagccggtccag
gctcagtgtggacatcgcttctgtgtccactgtttcaaactgctcaccagctctggaccc
aagccctgtgaagcatgtcaacaggaggagatatacgaggagccccagtccattctcaat
agcaatgaggcttttccagacaatgcagccggtagagaaatcgccagcctgcctgccaaa
tgtttcaatgggggctgctcttggacaggttgcatcaaagaatatgaggcacaacacgag
ggcaagtgcgagtatgagcacgtaccatgtgaagcctgccaggttctcatcctgcgtagt
gaaaaagagaggcataacgagagagaatgtgaagaaagaacattgaactgcaagtactgc
aaagtctccttcaacttcaagcagatcaaggctcatgatgaaatctgccagaagtttccc
atgcagtgcaaggactgtggaaagaaaaagatcccacgcgaaaagtttctagatcacagc
agatcctgtgccaagtctaagactgcatgtccattcagtgaggttggctgcaaggctgtg
attgataatggaaagcacagtgaccacgagcagacgagcgtcatggagcacatgcgtctg
atcctggcgacgtctatggtgcggctgcagcgtccggaggccccggggctgggggagtgg
caggaggactctgggattggcctgtaccgcgctcctgaggagggagccacagcttctgca
gccacagttgggggcggaactgctgcctctggacagaccagtggccttgaccataaggtg
acagtgctggagaatatagtgtgtgtactgaacagagaagtagagaggagctctctcact
ttagaggccttctctcgacaacatcgactagaccaggacaagatggagaacctcagcaac
aaggtgcgtcaactagagcgtactctcaccatgcgggatctacagctagccgagacagac
cagactctgagggagctccagttctgcacctttgacggtgtgtttgtttggaagatagct
gacttctcacgccgccggcaggacgctgtggccgggcgaacacccgccatgttctcacca
gcgttctattccagtaaatatggctataagatgtgtctgagactgtatctgaatggggat
ggaacaggtcgagggacacacctttctcttttctttgtggtgatgaggggcaagtgtgac
gctctgctcaaatggcccttcagtcagaaagtgactctgatgctgctggatcagaataac
agggagcatattattgacgccttccgacctgatgtcagctccacctctttccagcggcca
atcagtgagatgaacatagccagtggctgcccactcttctgtccattagctaaactgaca
ggcaagagttcctaccttagggatgataccattttcatcaaggccattgtagacctcaca
ggcttgtag
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integrated database retrieval system