Oncorhynchus keta (chum salmon): 118394629
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Entry
118394629 CDS
T09424
Symbol
dhx9
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase A
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118394629 (dhx9)
03012 Translation factors [BR:
oke03012
]
118394629 (dhx9)
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
118394629 (dhx9)
5.6.2.6 RNA 3'-5' helicase
118394629 (dhx9)
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118394629 (dhx9)
Translation factors [BR:
oke03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118394629 (dhx9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
ResIII
AAA_19
nSTAND3
AAA_14
ATPase
Motif
Other DBs
NCBI-GeneID:
118394629
NCBI-ProteinID:
XP_035643931
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All DBs
Position
15:complement(23567617..23587757)
Genome browser
AA seq
1321 aa
AA seq
DB search
MRPKSRPDSLVPQCYHVCRLNGLYLLAGSFEKVSGGGRVEKYKSAMADIKNFLYAWCGKK
KLTPSYDIRAAGNKNRQKFLCEVRIDGFNYTGMGNSTNKKDAQANAARDFVNYLVRVGEM
NAAEVPALGASGPDFSVPDCGGGGEGGNVGFGSLPPSGPIPPHLVVKAEQVNAPSAPVPG
VTGLGYSGGSGNFSEGGTSSNAPWDRGANLKDYYSKRDEQEAKATLESEEVDLNAGLHGN
WTLENAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMQLFVRQLGRKIIAREHGSNK
KLAAQSSALSIVRQLYHLGVIEPYSGVTKKKEGEILEAFEVNVVDELQHQLQSMAQELGV
AIPPPPPDPSTPVSLVQGKMAVFEPSQKQSMAGVVPWSPPQVNWNPWTSSNIDDGPLAFC
TPEQISTDLHHELTYQLEQDQSLQKVIGERDGLPVKKFEEEIMTAVQGSSVVIIRGATGC
GKTTQVPQYILDQFIKSGRASECNIIVTQPRRISAVSVAERVSYERGEDVGKSCGYSVRF
ESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLMVVLRDVVQTYP
EVRIILMSATIDTTMFREYFFNCPVIEVFGRTFPVQEYFLEDCIQMTHFIPPPSDRKRKD
KDEEGGDEEANCNVICGPEYTPETKRSMAQMNEKETPFELVEALLKYIETLQVAGAVLIF
LPGWNLIYSMQKHLEMNPHFGSQRYLILPLHSQIPREEQRRVFEPVPENITKVILSTNIA
ETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWGSKTNLEQRKGRAGRVRAGFCFHL
CSRARFDKLETHMTPEIFRTPLHEVALSIKLLRLGAIGHFLSKAIEPPPLDAVIEAEHTL
RELDALDTNDELTPLGRILAKLPIEPRLGKMMIMGCIFNVGDAVCTISAASCFPEPFIND
GKRLGYVHRNFAGTRFSDHVALLSVFQAWDDVRMGGEDAESRFCEHKRLNMSTLRMTWEA
KVQLKEILINSGFPEECLMTQMFNNVGPDNNLDVVISLLTYGSYPNVCYHKEKRKILTTE
GRNALIHKCSVNCPFSSQDMTYPSPFFVFSEKIRTRAISAKGMTLVSPLQLILFASKKIT
SNGEIIELDDWIKLKIPHNVAGCIAALRAGMEALVVEVTKDPEYIKQLDPTNERMLNIIR
QISKPSAAGLNLMVNNKRFGDGPRPPKMGRFDGGGGGGYRGGGYRGGGGYQGGGGYRGGG
YRGGGGYGGGNRGGGGYGGGNRGGGGYGGGNRGGGGYGGGNRGGGGXWRGNRGGYGGGQG
Y
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccaaagtccaggcctgacagtctcgtcccccagtgctatcatgtctgccgtctg
aatggtttgtatttgctagccggctcgtttgaaaaagtatctggtggaggtcgagtggag
aaatacaaatccgccatggcggacatcaagaacttcctgtatgcttggtgtgggaagaag
aaactaacacccagctatgacattcgagccgctggaaacaaaaaccgacagaagtttctg
tgtgaggttcgtattgatggattcaactacactggaatgggaaactccaccaataagaag
gatgcccaggcaaatgctgctagagactttgttaattatcttgtccgagttggagaaatg
aatgcagcagaagtcccagcccttggggcaagtggacctgacttcagtgtacctgactgt
ggaggagggggtgaaggagggaatgttggctttggaagtcttcctccaagtggacctatc
cctcctcacctggttgtgaaagctgagcaagtgaatgcaccttctgcgccagtcccaggt
gtcactggtttgggatattcgggcggtagcggcaatttttccgaaggtggcacaagcagc
aatgctccatgggatcgtggggccaatctaaaggactactactcaaagagagatgagcag
gaggcaaaggcgactctggagtctgaggaggtagatctgaacgcgggactccatggcaac
tggactttagagaacgccaaggcccgtctgaaccaatttttccagaaggagaagaatcaa
acagattacaaatacagccaagttgggcctgaccacaacaggagctttattgctgagatg
cagttatttgtaagacagcttggcagaaagataattgcccgcgagcatggctctaacaag
aagcttgcagcgcagtcctctgcgctgtctatcgtccgtcaactttaccatctgggtgtc
attgagccttattctggcgtcactaagaagaaagagggagaaattttggaagcttttgag
gtgaatgtggtggatgaactgcaacatcagcttcagagtatggcccaagaactgggtgtt
gcaattccacctccaccacctgatccaagtactccagtgtctttggtccaagggaagatg
gctgtgtttgagccctcccagaaacagagcatggccggggtggtgccctggtcccctccg
caagtcaactggaacccctggaccagcagcaatattgatgatggaccactagcattttgc
accccagagcaaatcagcactgacctccatcatgagctgacttatcaattggaacaagat
caaagcctacagaaggtcattggggagcgagacgggcttccagtgaagaaatttgaggag
gagataatgactgccgttcagggcagctcagtggtgatcattcgaggggcgaccggctgt
ggcaaaaccacccaggttcctcagtacatcctggatcagttcatcaagagtgggagggcg
tccgagtgtaacattattgtaacccagccccggcgtatcagtgcagtgtctgtggcagag
cgtgtttcctacgagagaggagaggatgtcggtaagagctgtgggtacagcgtccgcttt
gaatccatcctcccacgaccccatgccagcatcatgttctgcactgttggtgtgttactg
cggaagctggaagcaggtattcgcggtatcagccatgtgattgtggatgaaatccacgag
agagacatcaatactgacttcctcatggtggtgctgagggatgtggtccagacctaccca
gaggtccgcatcatcctcatgtctgccaccatcgacaccaccatgtttagagagtacttc
ttcaactgccctgtcatcgaggtgttcggccgcacattcccagtacaagagtactttttg
gaagattgtattcagatgacacatttcattccacctccgagtgatagaaagaggaaggac
aaggatgaggaaggaggagatgaagaggccaactgtaatgtgatatgtgggccagagtac
accccagagactaagcgctctatggcccagatgaatgagaaggagactccctttgagctg
gtggaggccctgctgaagtacatcgagaccctccaggtggccggggccgtgctcatcttc
ctgcccggctggaacctcatctactccatgcagaaacacctggagatgaacccacacttt
gggagtcaacggtacctgattctgcctctccactctcagatccccagagaggaacagagg
agggtatttgagcctgtgcctgaaaacatcaccaaggtgatcttgtccacaaacattgca
gagaccagtattactatcaatgatgtagtatatgtcatcgactcttgcaagcagaaagtg
aaactgttcacgtctcacaacaacatgaccaactacgccacagtctggggctccaagacc
aacctggagcagaggaagggtcgcgccggccgcgtccgggctggcttctgctttcatctg
tgtagcagagcacgcttcgacaaactggagacccatatgacccctgagatattccgtact
cctctccacgaggtagccctgagcatcaagctgctgagactaggagccattggccatttc
ctttccaaggccatcgagccccctcccctggacgcggttatagaggcagaacacacactg
agagaactggatgctttggatacaaatgacgagttgactccgcttggtcggatccttgca
aagcttccaatcgagccgcgtctggggaagatgatgattatgggctgcatattcaatgtt
ggagatgcggtgtgcacgatctcagcagcctcctgcttcccagagcccttcatcaatgat
ggtaagcgcttgggctatgtgcaccgcaactttgctggcacccgcttctcagaccacgtg
gcccttctgtcagtcttccaggcttgggacgatgtgagaatgggaggtgaggatgcagag
tccagattctgtgaacacaagaggctcaacatgtccacactgaggatgacctgggaggca
aaagtgcagctgaaggagatcctcatcaactctggcttccctgaggagtgcttgatgaca
cagatgttcaataacgttggacccgacaacaaccttgacgtggtcatctctctcctgaca
tacggctcctatcccaacgtgtgctaccataaggagaagaggaagattctcaccactgag
gggcgcaatgccctcatccacaaatgctccgtcaactgccccttcagcagccaggacatg
acctacccatcaccgttcttcgtctttagcgaaaagatccggactcgagccatctcagcc
aaaggaatgacactagtcagcccactccagctgatcttgtttgcctccaagaaaatcaca
tcaaacggggaaatcattgaactggatgattggatcaaactgaagataccgcataacgtg
gctggctgcatagctgctttgagggctggaatggaggcacttgttgtagaagtcaccaaa
gaccctgagtacatcaaacagctggatcccacaaacgagcgcatgctcaacatcatccgt
caaatctccaagccctccgcagctgggcttaacctcatggtcaacaataaacgttttgga
gatggtccacgtcctccaaagatgggcaggtttgacggaggaggcggtggaggatacagg
ggaggaggttacagaggcggtggaggataccagggcggcggcggatacaggggcggtgga
tacagaggtgggggtggttatggaggggggaacagaggtgggggtggttatggagggggg
aacaggggtgggggtggctatggaggggggaacaggggtgggggtggctatggagggggg
aacaggggtgggggtggcntatggagggggaacaggggtggttatggagggggccagggt
tattag
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