Oncorhynchus keta (chum salmon): 118396407
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Entry
118396407 CDS
T09424
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118396407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118396407
Enzymes [BR:
oke01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
118396407
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
118396407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
118396407
NCBI-ProteinID:
XP_035646479
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All DBs
Position
17:10458744..10469515
Genome browser
AA seq
438 aa
AA seq
DB search
MEEKQYTSLTVPTDYLQQWYQSTQQHPQAQHVMQYHNTGHMGHYMEGSREDRVMTELSVH
QELPVHQELDFHHDFLGHQEPIVQHHQPVDTSQAPMPGKRKRGRPPKQKPGEGQPQEEHD
QAEALKKAKRTLNRFNGMSVDEVMAKTLPDIIDHNLDILIIGINPGLLSAYKGRHYPNPG
NHFWKCLFLSGLTDEQLNHMHDQNLPEKYGIGFTNMVERTTPGSKDLSSKEFREGGHQLV
EKLKKYKPLIAAFNGKCIYEIFSKEIFGVKAKKLEFGLQPYTIPETETVCYLMPSSSPRC
AQFPRAQDKVHFYIKLKELRDKIKGVAPVAREVQETEYHFDLGLAKEDAKRMAIKEEQVD
PEYENCGGASQDAKQSTSYCNISSTKETGERMPSKDQATAMSHMPYDQWMTQSFADQIPD
ISCNSSNVAQPQLGAETF
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcagtatacgtcactgacggttcctacggattatctccaacagtggtac
cagtccacccagcagcacccccaagctcaacatgtgatgcagtaccataacacaggtcat
atgggccattacatggagggatccagagaggaccgggtcatgacagagctgtcggtccac
caggagctcccagtccaccaagagctggacttccatcatgacttcctcggccatcaagag
ccaattgtccaacatcatcagcctgtggatacatcacaagctccaatgccagggaagaga
aagagaggtaggcctcccaaacagaagccgggggagggccaaccgcaggaggaacacgat
caggcagaagctctgaagaaagccaaaaggacccttaaccgcttcaatggcatgtcagtg
gatgaggtcatggccaaaaccctgccagacattattgaccacaacctcgacattttgata
attggtatcaatccaggactattgtcagcctacaagggacgacattacccaaacccagga
aatcatttttggaaatgcctgttcctctctggtcttactgatgagcaactcaaccacatg
cacgatcaaaacttaccggagaagtatggcattggctttaccaacatggtggagaggaca
acgccaggaagcaaagacctctcaagcaaagagtttcgtgaaggaggccatcaattggta
gagaagctgaagaaatacaaaccgctaattgcagctttcaatggaaaatgtatttacgaa
attttcagcaaagagatctttggagtgaaggcaaagaaactcgagttcggcttacagccg
tacacaatcccagaaaccgaaacggtgtgctacttgatgccctcgtcaagcccccgctgt
gcccagttcccccgcgctcaggacaaggttcacttctacatcaagctgaaggagctacgg
gacaagatcaagggtgtggccccagtcgcccgtgaggtgcaagagacagagtaccacttc
gacttgggacttgccaaagaggatgctaagaggatggccatcaaggaagagcaggtggat
ccggagtacgagaactgcggtggggcgtcccaggatgcaaagcaaagcaccagctactgc
aacatttcctccaccaaagagaccggtgagagaatgcccagtaaggaccaagctacagca
atgagccacatgccatacgaccagtggatgacacagtcgtttgcggaccagataccggac
attagctgtaacagtagcaatgtagctcaacctcagttgggagcagaaaccttttga
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