Oncorhynchus keta (chum salmon): 127930603
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Entry
127930603 CDS
T09424
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1-like
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04530
Tight junction
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
127930603
09142 Cell motility
04810 Regulation of actin cytoskeleton
127930603
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oke04990
]
127930603
Domain-containing proteins not elsewhere classified [BR:
oke04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
127930603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PDZ
PH_9
SOS1_NGEF_PH
PDZ_6
Motif
Other DBs
NCBI-GeneID:
127930603
NCBI-ProteinID:
XP_052376171
LinkDB
All DBs
Position
6:complement(3063612..3255049)
Genome browser
AA seq
1797 aa
AA seq
DB search
MGNVESQNGDSGFYGNEKGHLSRKHTSRSLRLSTKHQQQNPSRRSLRPSAGKSEHRNSEA
STRSSSTPSIPQSLVENGLEPFNQTDELGEFGINPHWTDRVAMTMRPSESFPHDDDDDLT
SDPSLATPTPETSEVVLEREGAEEEGATTYPVEGDDAERETDGEVRYLQRVNEGPREEGS
CKKKRSKSADMWRDDSQEFSLSDLSQDHLTSTEEIIDGGEEEEGEEEEEEERASSRGTAG
SAERASSLDHLCSERSQTVLRGTHNRYAKNHRDGELTAHRGRDGEGDEGLISPQEEEGSG
YGAFTLPCRRSHCLSEGLSGHQVVPCPTFQGRRAQTTQDISGVLGEGSEYGDSGIDGVAT
ETDGEVGPGSRRRCKAMSASFSVYSAAGSSAFNGSDSGSSSGGGEGGGGRGGEGGGGRGG
EGGGRGGGGGGRKGGWGMYENLHQDFENQHWTRRERDCTEEAGSAESDERSSGTLSTAYP
SDALIGCCAQGTVRKAGALAVKNFLVHKKNKKVEPATKRKWKHYWVCLKGCTLFLYETDG
RSGIDHHSVPKHAVWAEYSILQAVPEHPKKDFVFCLSNSLGDAFLFQTSGQTELENWITA
IHSACAAAVARQHHREDTVRLLRTEIRKLEQKIDMDEKMKKMGDMQLSAVTDNKKRKTIL
EQIFLWEQNLEQFHLDMFRCRCYLASLQGGELPNPKRLLAVASRATKQAMGRLGIFSVSS
FHALVAVRTESAVRKRSQAMPRPSSKRRSRFSSLWGLDTTSKKKVKGRPSINQVFVAGGE
PVIKPTERMFEDTASEKSKEEGSLKMIPQDSVDSEIWVPDYLAPSWVCLPNDQPVLVVIQ
PGETAEDTLDAVCKAHKLDPSNFYLRLKVCVEDQLLLYVPKMEEDISDLLYKEIEICPKT
TKLIRFDKAESCTLGYGFSIAVVDEEGTQQLHITEVNAGGLASAKGLHAGDEILLLNGKP
ASALGVVDMRSALVGPSLSLSVSTLPTLDLRDLCPFPPRRSNTAEYDTCTDIYSQSQEDI
LDEVSGLTVVSPDDTLEDESVLDLENSGHNQADYTEPGQKSTEQVTAYCRSLHEMNPSHA
SPQSSSSCSSSLSPSQVMPVAAGIAIQRQLSHADKLRKVISELVETERTYVKDLGCLIER
YLTPLQKERFLTQDELDVLFGNLGEMLQFQVEFLKTLEDGTRLVANLDKLERVEQFKKVL
FSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAKTDADFKAFLAERNPKQQHSSTLESY
LIKPIQRILKYPLLLRELYSLTDPDSEEHYHLNVAMKAMNKVASHINEMQKLHEEYGAVF
DQLINETTVDRKEVSDLSMGDLLLHSTLVWINPPASLVKGKKDPELATFVFKTAVVFVYR
DRSKQRKKLGASHRPAVSDDRVPFLFRHMISTDSLQVRALTNSEGTAVCEIVHVRSESEG
RPERTFHLCCSSVDSKKDFLKTVHSILRDKQRRQLMKTESLPPNQQYVPFGGKRLCNLKG
NRPAMNRAVSAPSRTLGRRKLVRNRFTIDTDLVLHDNHEDSNPTHSTHDHSHQHPHSHQH
PHSHQHPHSHQHPHSHQHPHSHQHPHSHQPPHSHNPLLPTQMPQQQTLLATGGDTDRWVE
EQFDLGCYDDQGGVTGERRMEGGIEGRMEVKETDILSDDDEYCKSVRASSTEPSLLEERM
EGVTLEERSQDQDRGVDEEEEEGKKEVEEERRSSQGILQEDERGERGVSQVDSVSQAPPP
SRSPAPPVKLTPLRKQWAAEGVAGKQCSVEGVAKRDHCDVIWVRREDYANGGNNDVF
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggggaatgtggaaagtcagaatggtgacagcggtttctacggaaacgagaaaggtcac
ctgtcccgaaagcacacgtcccgatccctccgcctctccaccaagcatcagcagcagaat
cccagtcgacgctccctacgaccctcggcaggaaagtcggaacaccggaattccgaagcc
agcacccgctcttccagtacgcccagtatcccacaatccttagtggagaacggcctggaa
ccttttaaccagacagacgaactgggggagtttggaatcaaccctcattggactgaccgc
gtcgccatgacgatgaggccttccgagtccttcccgcacgacgacgacgacgacctcacc
agtgacccctctttagccacgcccactccagaaacctccgaggtcgttctggaacgcgaa
ggagctgaggaagaaggagcgacgacgtacccggtagaaggggacgacgcggagagagag
acggacggagaggtgcggtacctccagagggtgaacgagggaccgagggaagaaggaagt
tgtaagaagaagaggtctaaatcagcggacatgtggagagacgacagtcaggagttctct
ctgtcagatctcagccaggaccacctcacctccactgaagagattatagatggaggagag
gaagaggagggtgaagaggaagaggaggaagagagagccagttccagaggaacagcaggt
tctgcagagagagcctcatcactagaccacctgtgtagcgagcgcagccagacggttctg
cgaggaacacataaccgctacgccaagaaccaccgggacggggaactcaccgcccacaga
ggaagggatggagagggggatgaagggctgatctcgccccaggaggaggagggaagcggg
tacggggcctttacgctgccctgtcggaggtcccactgtctgtctgaaggtctgtcagga
caccaggtggtaccgtgtccgactttccagggtcgaagggcacagacgacacaggacata
tcgggcgtgctgggagagggcagtgagtacggcgatagcggcatcgacggggttgccacg
gagacggacggggaagtggggccggggtcacggcggcgctgtaaggccatgtcggcctcg
ttctccgtctactctgctgccgggagcagcgcgtttaacgggagtgacagcgggagcagc
agtggaggaggagagggaggaggaggaagaggaggagagggaggaggaggaagaggagga
gagggaggaggaagaggaggaggaggaggtggaagaaaaggaggatggggaatgtatgag
aacttgcatcaggactttgagaatcaacactggactcgtcgagagcgtgactgcacggag
gaggcgggctcagctgagagtgacgagcgtagcagcggcacgctaagcacggcttaccca
tcagacgctctcattggctgctgtgcgcagggcacggtgaggaaggcgggagctctggca
gtgaaaaacttcctggttcacaagaagaacaagaaggtggagccagccaccaagaggaag
tggaaacattactgggtttgtctcaaaggatgcactctgttcctgtacgagactgacggg
cggtcggggattgaccatcatagtgttcctaaacacgctgtgtgggctgagtacagtatc
cttcaggccgtaccagaacaccccaagaaggactttgtcttctgcctcagcaactctcta
ggggatgcatttctcttccagacgtcgggccagacggaactggagaattggatcacggcg
atccactcagcgtgcgcggctgccgttgctaggcaacatcaccgggaggatacggtgcga
ttgctaaggacagagatcaggaaactggagcagaagatagacatggacgagaagatgaag
aagatgggagatatgcagctgtctgcagtgacagataacaagaagagaaagactattctg
gaacagatcttcttgtgggagcagaatctagagcagttccacctggacatgttcaggtgt
cgttgttacctggccagtctgcagggaggggagctgcccaaccctaaacgcctgctagcc
gtggcctccagagccaccaaacaggccatgggacgcctgggaatcttctcggtgtcttcc
tttcatgcgcttgtggcggtgcgaacagagagcgcggtgaggaagcggtcccaggctatg
ccccgcccctctagtaaacgtcggagtcgcttctcttccctctgggggctggacaccaca
tctaagaagaaggttaaaggtcgacccagcatcaaccaggtgtttgttgctgggggggaa
ccagtgatcaaaccaacggagagaatgtttgaagatacggccagtgagaaatcgaaggag
gagggttcattgaaaatgattccccaggacagcgtggacagtgagatttgggttcctgac
tacctggccccatcctgggtgtgtctacctaacgaccagcctgtgcttgtcgtcattcaa
ccaggggagactgcagaagatacgctggacgctgtctgcaaggcccataaactggacccg
tctaacttctacctgcgtctgaaggtgtgtgtagaggatcagctgctgctatatgttccc
aaaatggaagaagacatctctgatctgctctacaaagagatagaaatatgtcccaaaacc
accaagctgatccgcttcgacaaagctgagtcctgcacgttgggatacggtttctccata
gcagtagtggacgaggaggggactcagcagctccatatcactgaagtaaatgcaggagga
ctggcttctgctaaaggcctgcatgcgggtgatgagatcctgttgttaaatggtaaacca
gcatcggctctgggcgtggtggatatgaggtcagcgttagtcggcccctcgttgtccctg
agcgtgagcaccctgccgacccttgacctacgcgacctctgcccttttccccctcgacgc
tccaacacagcagaatacgacacttgtacagacatctattcccagagccaagaggacatt
ctggatgaggtatcagggttgacggtggtcagtccagatgatactttagaggatgagtca
gttctggatctggagaattcaggacacaaccaggcggactacactgagccaggacagaag
agtactgagcaggtgactgcatactgccggagtctccatgagatgaatccttcccatgct
tcccctcagtcttcctcgtcctgctcttcctccctctctcccagccaagtgatgccagtg
gcggcgggcattgccatccagcgacagctgtcacacgccgacaaactacgtaaagtcatc
agtgaactggtggagactgagaggacctacgtcaaggacctgggctgtctgatagagcgt
tacctaactcctctgcaaaaggaaagattcctcacccaggatgagctcgatgtcctgttc
ggtaacctcggagagatgctgcagttccaggttgagttcctgaagactctagaagatggg
accagactggtagccaacctggacaagctggagagggtagaacagtttaagaaagtgctg
ttctctctgggtggatcgttcctgtactacgccgaccgctttaagatctacagcgctttc
tgtgccagccacaccaaggtgcccaaggtcctggccaaagctaagacagatgcagacttc
aaggcgttcctggcagagaggaacccgaaacagcaacactcttcaaccctggagtcctac
ctgatcaaacccatccagaggatcctgaagtacccactactactgagagagctgtactca
ctgacggaccctgatagtgaagaacactatcacctgaatgttgcgatgaaggccatgaac
aaggtggccagtcacatcaatgagatgcagaaacttcatgaggaatatggagccgtgttt
gaccagctcatcaacgagacgaccgtcgaccggaaggaggtatccgatctatccatggga
gatcttctcctccactccaccctggtgtggatcaatcctccagcctccctggtcaagggc
aaaaaggaccctgagctggctaccttcgtgttcaagactgcggtggtctttgtgtacaga
gatcgctccaagcagaggaagaagctcggcgcgtctcatcgtcctgctgtgtcagatgac
agagtcccgttccttttccgtcacatgatctcaacagactccctacaagtccgcgccctc
acaaactccgagggtacagcggtgtgtgagatagttcacgtgaggtcagagtctgagggg
agaccagagagaacctttcacctgtgctgcagttctgtggacagtaagaaggacttcctg
aagacagtccactccatcctgagagataaacaacgacgtcagctgatgaagactgagtct
ctacctcccaaccagcagtatgtccccttcggaggaaaacgcctctgtaacctcaaggga
aacagaccggccatgaacagagcagtctcagccccgtctcggacccttggtcgcaggaag
ctggttaggaaccgattcaccattgacaccgacctcgttctccatgacaaccacgaagac
tctaaccccacccactctacccatgaccattcccaccagcatccacattcccatcagcat
ccacattcccaccagcatccacattcccaccagcatccacattcccaccagcatccacat
tcccaccagcatccacattcccaccagcctccacattctcataaccccctgcttcctacc
cagatgcctcagcagcaaacgctgttggcgactggaggcgacacggaccgctgggtggaa
gaacagttcgacctgggttgctacgacgaccagggaggagtgacgggggagaggaggatg
gagggagggatagagggaaggatggaggtgaaagagacggacattctgagcgacgacgac
gagtactgcaagtcagtcagggcttcatcaaccgaacccagcctcctggaagagaggatg
gagggagtgactctagaagaaaggagccaagaccaggacagaggggtagacgaggaggag
gaggagggaaagaaagaggtagaggaagagaggaggagctcccagggcattctccaagag
gacgagaggggtgaaaggggagtgtcacaagtagactctgtctcccaagcccctcccccc
tcacggtcccccgcccccccggtgaagcttaccccgctcaggaagcaatgggctgcagag
ggagtggccgggaagcagtgttccgtggagggagtggccaagagggaccactgtgatgtc
atctgggtgcgacgcgaagactacgccaacggagggaacaacgacgtcttctga
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integrated database retrieval system
