Oncorhynchus kisutch (coho salmon): 109865117 Help Entry 109865117         CDS       T09179                                  Name (RefSeq) protocadherin-15-like isoform X1   KO K16500   protocadherin-15 Organism oki  Oncorhynchus kisutch (coho salmon) Pathway oki04519   Cadherin signaling Brite KEGG Orthology (KO) [BR:oki00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04519 Cadherin signaling     109865117  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:oki03037]     109865117    04515 Cell adhesion molecules [BR:oki04515]     109865117 Cilium and associated proteins [BR:oki03037]  Primary cilia and associated proteins   USH complex and associated proteins    109865117 Cell adhesion molecules [BR:oki04515]  Cadherins   Protocadherins    109865117 SSDB OrthologParalogGFIT Motif Pfam:  Cadherin ECD PCDH15_12th Cadherin_FAT4_N Ig_Cad99C_N Cadherin_CELSR2_9th Fibulin_C Cadherin_2 CDH23_a-b Ig_SMCHD1_6th Ig_BT4661_4th Motif Other DBs NCBI-GeneID:  109865117 NCBI-ProteinID:  XP_031655488 Ensembl:  ENSOKIG00005029469 LinkDB All DBs Position LG20:13663971..13959264 Genome browser AA seq 1724 aa AA seqDB search MQKRSWHFKWLGIGLLLLATCCLSQDTDDWQYDECKLSRTGPPATIVAIDEESPNGTLLV ENMQIQGRVEDPGRTISLSLRDNYNHWVILDPVRQRLYLNSTGRALDRDPPSYIHSIVVQ VQCTNELVGTVILHEVRIVVRDRNDNAPRFQQPRYYVAINELTPVGTTIFSGFTGNNGAL DIDDGPNGQIEYIIQYNPTDPAANRTFDIPLTLSGSVVLRERLNYEEITRYLVLIQANDR APYPNERRTATTTLTVDVLDGDDLGPMFLPCSLVDNTRDCSPLTYRVHILELTDPSKVNP VNVTPVIQAVDQDRNIQPPSQRPGILYSILIGKPETYVDFFSLNRTTAELQLLKPLIRDL YNRFDLVIKAEQDNGHPLPAFANLHIEVLDENNQSPFFLEATYQGFITESAPVGTTVFTD ASLTTPLGINVLDNDIEETKDPMLQISLDNYNTIFTVTPSGITRYLTLLKPVDREEQHSY TFTMVASDGVQESTPVAINITVIDANDNTPTFPNTSYSVNVYTDMQPGETILQLTALDAD WGPNGLVTYKILAGDQGHFIINNRSGVITVVPGVSLAVGHSYTLTVKAVDSGPGSQRRSS ITTVYIEVLPPNNQSPPRFPRFLYSLEVSEAMRIGATLLSLQATDRERDVITYSIQNGDP HHLFELSQMSGLLVLRKPLDRETEDRYTLVVTASDSHPEGTSTATVNIVVTDVNDNDPVF DRLLPQNLTVTEEEANCFVGQVKATDPDAGVNGQVCYQLVNHADLFRINSNGTISTAVPL DREVRGQYDLMVEAEDGAVEDPRRTTLTLSVTVLDVDDNSPVFSQPSYTVNLPENSPKNT VILQFTAKDADLDSNITFRIRTQEARQLFAVNPVTGELSVLQTLDFETLAASDHTYTFVV EALDNEESMPPGLATVTVKIMDMNDYSPVFSQVVYRGMVAPNAVKGTVVATVQAEDLDPP GTPASRVRYRLDLNEEPYSGSIFDVDEVTGSVITRVNLNEEPNLVFSLVIVAYDDGEPMK VNKTLVVITVLQPSIIPVFTQEEYRFPPVSEKAKVGKLVGVILAAAVNQTIVYSIAEGNE EGVFRLNNNTGVISTAKPLDYEANGSYSLRVEADSMGLAESNLRAPSKTNTARVFIDVLD ENDHSPVFTKPLYLGGVAEDAKTFTSVLQVQALDKDTGNYSSMQYRLVIPPTTNGKDGFV IEPYTGVIKTAIMYRNMRRSYFKFEVVATDNYGQGGLSNKAEVVVSVVNLLDMQVVVSNV APTVVEQNKDKLLGVLERYVQDQIPGAKVVVESIGPRRFGDGFEQEDYSKSDLMVYAVDP LTNRAISRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRSPDVVTSVKKAMQTVGYTEG ALLALAVIIILCCIPAILIVIITYRQFKERQAECAKTARIQMTLPTGKSVVAATNNLYEE LGDSTMRGYGHHEQQQLLRPSLLRPEELSIESGIDPGQDYYTQDYYNCDHGYELPQYGSR RKLISPTGLYDEYGEVIVEDDGSYYYCSPQESDGEYGRKKRIKLVVDREYETSSTGEDSA PEPQRNRLSNLTNHSNVNGSVYLAQNGSVIRTRRAAHSNNIKVNSPVRLGKHFKKLDKLA VTHEERLPLNSPVATTSSADKNLNTQPSSGSLASSTTGAESIASKSNIAKARSERTWDAE EQESTVDNEDVREPLESQSDRTYSDEEELWMGPWNNLHIPMTKL NT seq 5175 nt NT seq  +upstreamnt  +downstreamnt atgcagaagaggtcatggcacttcaaatggttagggataggacttctgctgttagctact tgttgcctgtctcaagacacagatgactggcagtatgatgaatgcaaactctccagaact ggtccacccgccaccattgttgccatagatgaagagagccccaatggaacacttttggtt gagaatatgcaaatccaaggccgagtggaagacccaggcagaaccatctctctctccctc cgagacaactacaaccactgggtcatactggacccggtcagacaaaggctgtacctcaac agcaccggcagggccctcgaccgagaccccccgtcctacatccattccatcgttgtccag gtccagtgcaccaatgagctggtcgggaccgtcattttacacgaggtgcgcattgtggtg agggatcgcaatgacaacgcaccccgattccagcagcctcgctactatgtcgccataaat gagttgaccccagttggcaccaccatcttctccggcttcactgggaataatggagccctg gacattgatgacggcccaaacggacagatcgaatacatcatccagtacaacccaactgac ccggcggccaacaggacgtttgacatccctctcaccctctccggctcggtggtcctgagg gagaggctcaactacgaggaaatcacccgctacctggttctcatccaggccaatgatcgc gccccgtaccccaacgaacggcgcaccgccaccaccaccctgactgtagacgtgctggac ggggatgacctggggcctatgttcctgccctgctctctggtcgacaacacacgtgactgc agccccctcacctaccgggtccacatcctggagctcactgacccaagcaaagtgaaccct gtcaacgtgactcccgtcattcaggccgtggaccaggacaggaacatccagcctccatca cagaggccaggcatcctctactccatcctcattggcaagcctgagacgtatgtcgacttc ttctccctgaacagaaccaccgccgagctgcagctcctcaaaccgctcatcagggacctg tacaatagatttgacttggtaatcaaggcagagcaggacaacggccaccccctgcctgcg tttgctaacctccacatcgaggttctggatgagaacaaccagtcaccattcttcctggag gccacataccagggcttcatcaccgagtcagcaccagtgggtaccacagtgttcaccgac gccagcctcaccacccctctggggatcaacgttctggacaacgacattgaggagacgaaa gatccaatgctgcagatatccttggacaactataacacaatcttcacagtgacaccttca gggattacccgctacctgacactgctgaagcccgtggaccgtgaagagcagcacagctac acgttcacaatggtggcttctgatggagttcaggagagtactccagtggccattaatatc acagtgatcgatgccaatgacaacacaccgacctttccgaacacctcctacagtgtcaat gtttacacagatatgcagcctggggaaacaatattacagctgacggctctggatgctgac tggggtcccaatgggcttgtgacctacaagatcctggcgggggatcaaggacacttcatc atcaataaccgctcgggagtgatcaccgtggtgcctggcgtctccctggccgtgggacat tcctacacgctgaccgtgaaggctgtggatagtggtccggggtcccagaggaggagctcc atcaccaccgtgtacattgaggtgctcccccccaacaaccagagccccccacgctttccc cgctttctctacagcctggaggtcagcgaggccatgaggatcggagccacactcctcagc ctgcaggcaacggaccgtgaaagagacgtcatcacctacagcatccagaacggggatccc caccacctctttgagctctcgcagatgtcagggctgttggtcctgaggaaaccactggac agggagacagaggatcgctacaccctcgttgtaactgcctcagatagccatccagaaggg acatccacggccactgtgaatattgtggtcactgatgtcaacgataatgaccctgtcttc gatcggctcctgccccaaaacctaaccgttacagaggaggaggccaactgttttgtgggc caagtaaaggcaacagatccagacgcgggggttaatggccaggtgtgctaccaactggtc aatcacgccgacctcttcaggatcaactccaatggcaccatctccaccgcagtgcctttg gatcgagaggtcaggggtcagtatgacctcatggtggaggcggaggacggagcggtggag gaccccaggaggaccacactgactctgtcggtgaccgtgctggatgtggatgataacagc ccggtgttctcacaaccatcctatacggtcaatctgccggagaatagtcctaagaacaca gtcatcctgcagtttaccgccaaagacgctgacctggactccaacatcaccttccgtatc cggacgcaagaggccagacaactttttgccgtcaacccagtgactggagagctctctgtg ctgcagacgctagactttgagaccctggcagcctcggaccatacctacaccttcgtggtg gaagccctggacaatgaagagagcatgcccccaggcctggccactgtcactgtaaagata atggatatgaatgactactctccagtgttcagccaggtggtgtacaggggcatggtagct cccaacgcagtcaaggggaccgtggtcgccacggtacaggcagaggacctagaccctcct ggcacccctgccagccgtgtgcgttacagactggacctgaatgaggaaccttacagtggc agcatctttgacgtggatgaagtcacaggcagcgtcatcacacgagtcaacctcaatgaa gagcccaatctagtgtttagcctggttattgttgcctatgacgatggggagccaatgaaa gtcaacaagaccctggtggttatcactgtcctgcaaccctccatcataccagttttcacc caggaggaatacagattcccccctgtgagtgagaaggctaaggtggggaagctggtcggt gtcatattggctgcagctgtcaatcaaacgatcgtctattccatagcggagggcaacgag gaaggtgtgttcaggctcaacaacaacaccggggtgatctcaacggccaagcccctggac tatgaggccaacggcagctacagcctcagagtggaggctgactctatggggttggccgag tccaacctccgagcgccctctaagactaacacagcgagggtgttcattgatgttctggat gagaatgatcactctcctgtctttaccaaacccttgtatctgggaggagtggccgaggac gccaagacattcacttccgtactacaagtccaggcactggacaaggacacagggaattac agctccatgcagtacaggctcgttatccctcccaccaccaacggcaaggacggctttgtc atcgagccctacaccggtgtcatcaagactgccattatgtacaggaacatgcgccggtct tacttcaagttcgaagtggtcgccactgacaattacggccaggggggactgagcaacaag gcagaggtggtggtatccgtggtgaatctgttggatatgcaggtggtggtgtccaacgtt gctcctacagtggtggaacagaacaaggacaagctcctcggggtcctggagcgctatgtg caggaccagattccaggggccaaagtggtggtggagtccataggaccgcggcggtttggc gacggcttcgagcaagaggactactccaagtccgacctgatggtgtatgctgttgaccct ctgaccaacagggccatttcacgccaagagctgttcaagtttctggacgggaagctgctg gacatcaacaaggagttccagccgtacctgggccgaggagggaggatcctggagatacgc tcccctgacgtggtgaccagcgtgaagaaggccatgcagaccgtgggctacacagagggg gcgctgctcgccctcgccgtcatcatcatcctctgctgcatccccgccatcctcatcgtc atcatcacctacaggcaattcaaagagagacaggcggagtgtgctaaaactgcccggata caaatgaccctccctactggcaaatcagtggttgctgccaccaacaatctgtatgaagag ctgggggacagcaccatgcgcgggtatggacatcatgagcaacagcagttgctcaggccc tctcttctgagaccggaggagctctctattgagtctggtattgatcctggccaggactat tacacccaggattattataattgtgaccatgggtatgagctgcctcagtatggcagtcgc aggaagttgatatctccgacaggcttgtatgatgagtacggagaggtgattgtggaagac gatgggagctactactattgcagtccacaggagtcggatggagagtacgggaggaagaag cggatcaagctggtggtggacagggagtatgagaccagttccacgggggaggacagcgct ccggagccccaaaggaaccggctgtccaatctgaccaaccacagcaacgtcaacggcagc gtgtacctagcacagaacggctcggtcatacgcacccgccgggccgcccactcaaacaac ataaaggtcaactccccagtgcgcctgggcaagcactttaagaaactagacaaactggcg gtgactcacgaggagagactgccgctcaacagccccgtggcgaccacgtcctcagccgac aagaacctaaacacccagccctccagcggctccctggcctccagcaccacgggagccgag agcattgcgtccaagtccaacatcgccaaggccaggagcgagagaacgtgggacgcggag gagcaggagtcaacagtggacaatgaggatgtgagagaacctttagaatctcagagcgat cgcacgtattccgatgaggaggagctatggatggggccctggaacaatctgcacatacca atgacaaaactgtga

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