Oncorhynchus kisutch (coho salmon): 109866447 Help Entry 109866447         CDS       T09179                                  Name (RefSeq) thrombospondin-1 isoform X1   KO K16857   thrombospondin 1 Organism oki  Oncorhynchus kisutch (coho salmon) Pathway oki04115   p53 signaling pathway oki04145   Phagosome oki04148   Efferocytosis oki04350   TGF-beta signaling pathway oki04510   Focal adhesion oki04512   ECM-receptor interaction oki04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oki00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109866447   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109866447  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109866447    04148 Efferocytosis     109866447   09143 Cell growth and death    04115 p53 signaling pathway     109866447   09144 Cellular community - eukaryotes    04510 Focal adhesion     109866447   09142 Cell motility    04820 Cytoskeleton in muscle cells     109866447  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oki04131]     109866447   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oki00536]     109866447 Membrane trafficking [BR:oki04131]  Endocytosis   Phagocytosis    Opsonins     109866447 Glycosaminoglycan binding proteins [BR:oki00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109866447 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C TSP1_ADAMTS EGF_3 Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  109866447 NCBI-ProteinID:  XP_031656584 Ensembl:  ENSOKIG00005016558 LinkDB All DBs Position LG21:39062609..39080867 Genome browser AA seq 1174 aa AA seqDB search MKLTGIFLLLMLLTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI VLIDDTINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLEGKDCQGEG RQTETCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT QQCNKNACPIDGCLSNPCFPGTKCTSFPDGTWRCGKCPSAYSGDGIKCKDIDECKEVPDA CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATARKQVCTPRNPCLDGSHDCN KNARCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPL EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRGKEQ NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttctgctgttgatgcttttgacctgcgagagcgttcgagtt gcagagaaccgagacgacaatagcgtgtacgacctgttcgagctggtccaagtctccaag aagaaccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc atccacgccgagaggggcttcctcctcctgcttaacttcaagcagtttaagcggaccagg ggctccctcttgaccgtggagaagcgggacggatcaggagccgtgttcgagattgtctcg aatggaaaagcgaacaccctggatgtggttttctccaccgttaataagcaacaggtggtc tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgct cccatccagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc actttggacgcgattctgcgcaacaagggatgtcaaaactctgttctgactgatgagatc gtccttatcgacgacaccatcaatgggtccagccctgccattaggacggactacactggc cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg ttcaaggaattgaaggggctgggagtggtggtgaaggagctgtccaatgagctacgcaaa gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg cacaacggcatcgtccacaagaacaaggccgagtggaccgtcgacgactgtaccgagtgc acctgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc aacgcaaccgtgcccgatggagagtgctgcccgcgctgtggaacaccgagtgactatgcg gaggacggctggtccctgtggtctgaatggacgcactgttccgtgtcttgtgggcgggga attcagcagagaggccgctcctgcgaccgcatcaacaacaactgcgagggaacctcggtc caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg agccactggtccccctggtcatcctgctcggtcacctgtggggctggtgtcatcacccgt atccgcctctgtaactcccccacaccccagctggaaggcaaggactgccaaggagaggga agacagactgagacgtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgtctc tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgactccaaggccact cagcagtgcaacaagaacgcctgtcccatcgatggctgtctgtccaacccttgcttccct gggaccaagtgcaccagcttccctgatggaacatggaggtgtggaaaatgcccctctgct tactctggtgacggcatcaagtgcaaggacattgatgagtgcaaagaggttcctgacgct tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg ccctgtcctgcacgctactctggacctcagcccttcggcaggggagtggaggaggccacc gccaggaaacaggtgtgtacaccacgtaacccctgcctggatgggagccacgactgcaac aagaacgcccgctgtaactacctgggacaatttgccgaccccatgtaccgctgtgagtgt aagcctggctatgctggaaatggacacatctgtggtgaggacacagacctggacggatgg cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccattcgtgtac aaccccaggcaatatgactatgacagagatgatattggagatcgttgtgataactgtcct tacaacagcaaccctgaccagaccgacacagacaacaacggggaaggagacgcctgctct gtggacattgatggagatggtattctgaatgagaaagacaactgcccgtacgtctacaac gtggaccagaaagacactgacctggacggtgtgggagacatgtgtgacaactgtcctctg gaacacaaccctgaccaggttgactctgatgacgaccgtgtgggagataagtgtgacagc aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccctacatcccc aacgctaaccaggccgaccacgacaaagacggaaagggagacgcctgcgaccacgatgat gacaatgacgggatcccagacgagaaagataactgcagacttgccttcaaccctgaccag attgactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaat gtgcctgacatctacgacgtgtgtccggagaactttgacatcagcgaaacggacttcagg aagttccagatggttcccctggaccccaagggaacgtcccagatcgaccccaactgggtg gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt ggttttgatgagttcaactctgtggacttcagtggtaccttcttcatcaacacagagcga gatgatgactacgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac tcaggactgtccatcaaggtggtcaactccactactggacctggtgagcacctcaggaac gctctctggcacactggtaacaccccaggacaggtgaagactctttggcacgaccccaag aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca ggacacatcagagtggtcatgtacgaggggaagaagatcatggctgattctgggagcata tatgacaagacgtacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta tacttctcagacctcaagtatgaatgcagaggtaaggaacaatga

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