Oncorhynchus kisutch (coho salmon): 109867953
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Entry
109867953 CDS
T09179
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04137
Mitophagy - animal
oki04141
Protein processing in endoplasmic reticulum
oki04210
Apoptosis
oki04217
Necroptosis
oki04621
NOD-like receptor signaling pathway
oki04622
RIG-I-like receptor signaling pathway
oki04920
Adipocytokine signaling pathway
oki05132
Salmonella infection
oki05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109867953
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109867953
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
109867953
09143 Cell growth and death
04210 Apoptosis
109867953
04217 Necroptosis
109867953
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109867953
04622 RIG-I-like receptor signaling pathway
109867953
09152 Endocrine system
04920 Adipocytokine signaling pathway
109867953
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109867953
09171 Infectious disease: bacterial
05132 Salmonella infection
109867953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109867953
04121 Ubiquitin system [BR:
oki04121
]
109867953
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109867953
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
109867953
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
109867953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF3_RING
TRAF2_zf
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
109867953
NCBI-ProteinID:
XP_020312888
Ensembl:
ENSOKIG00005006095
LinkDB
All DBs
Position
LG23:21272387..21294406
Genome browser
AA seq
522 aa
AA seq
DB search
MALPSLDSSLQGIPKNVLAVSMETKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTSSGP
KPCEACQQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCFNGGCSWTGCIKEYEAQHE
GKCEYEHVPCEACQVLILRSEKERHNERECEERTLNCKYCKVSFNFKQIKAHDEICQKFP
MQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKAVIDNGKHSDHEQTNVMEHMRL
ILATSMVRLQRPEAPGLGEWQEDSGIGLYRAPEEGATASAATVGGGTAASGQTSGLDHKV
TVLENIVCVLNREVERSSLTLEAFSRQHRLDQDKIENLSNKVRQLERTLTMRDLQLAETD
QTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGD
GTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRP
ISEMNIASGCPLFCPLAKLTGKSSYLRDDTIFIKAIVDLTGL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggccctgccctctttagattcctccctccaagggatcccgaagaatgtgctggctgtt
tccatggaaactaagtaccaatgccagcagtgtcaccaggtcctgaggaagccggtccag
gctcagtgtggacatcgcttctgtgtccactgtttcaaactgctcaccagctctggaccc
aagccctgtgaagcctgtcaacaggaggagatatacgaggagccccagtccattctcaat
agcaatgaggcttttccagacaatgcagccggtagagaaatcgccagcctgcctgccaaa
tgtttcaatgggggctgctcttggacaggttgcatcaaagaatatgaggcacaacacgag
ggcaagtgcgagtatgagcacgtaccatgtgaagcctgccaggtcctcatcctgcgtagt
gaaaaagagaggcataacgagagagaatgtgaagaaagaacattgaactgcaagtactgc
aaagtctccttcaacttcaagcagatcaaggctcatgatgaaatctgccagaagtttccc
atgcagtgcaaggactgtggaaagaaaaagatcccacgagaaaagtttctagatcacagc
agatcctgtgccaagtctaagactgcatgtccattcagtgaggttggctgcaaggctgtg
attgataatggaaagcacagtgaccacgagcagacgaacgtcatggagcacatgcgtctg
attctggcgacgtctatggtgcggctgcagcgtccggaggccccggggctgggggagtgg
caggaggactctgggattggcctgtaccgcgctcctgaggagggagccacagcttctgca
gccacagttgggggcggaaccgctgcctctggacagaccagtggccttgaccataaggtg
acagtgctggagaatatagtgtgtgtactgaacagagaagtagagaggagctctctcact
ttagaggccttctcgcgacaacatcgactagaccaggacaagatagagaacctcagcaac
aaggtgcgtcaactagagcgtactctcaccatgcgggatctacagctagccgagacagac
cagaccctgagggagctccagttctgcacctttgacggtgtgtttgtttggaagatcgct
gacttctctcgccgccggcaggacgctgtggccgggcgaacacccgccatgttctcacca
gcgttctattccagtaaatatggctataagatgtgtctaagactgtatctgaatggggat
ggaacaggtcgagggacacacctttctcttttctttgtggtgatgaggggcaagtgtgac
gctctgctcaaatggcccttcagtcagaaagtgactctgatgctgctggatcagaataac
agggagcatattattgacgccttccgacctgatgtcagctccacctctttccagcggcca
atcagtgagatgaacatagccagtggctgcccactcttctgcccattggctaaactgaca
ggcaagagctcctaccttagggatgataccattttcatcaaggccattgtagacctcaca
ggcttgtag
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integrated database retrieval system