KEGG   Oncorhynchus kisutch (coho salmon): 109867953
Entry
109867953         CDS       T09179                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04010  MAPK signaling pathway
oki04137  Mitophagy - animal
oki04141  Protein processing in endoplasmic reticulum
oki04210  Apoptosis
oki04217  Necroptosis
oki04621  NOD-like receptor signaling pathway
oki04622  RIG-I-like receptor signaling pathway
oki04920  Adipocytokine signaling pathway
oki05132  Salmonella infection
oki05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109867953
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    109867953
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    109867953
  09143 Cell growth and death
   04210 Apoptosis
    109867953
   04217 Necroptosis
    109867953
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    109867953
   04622 RIG-I-like receptor signaling pathway
    109867953
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    109867953
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109867953
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    109867953
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109867953
   04121 Ubiquitin system [BR:oki04121]
    109867953
Enzymes [BR:oki01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109867953
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     109867953
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    109867953
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF3_RING TRAF2_zf zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-C3HC4_2 zf-RING_6
Other DBs
NCBI-GeneID: 109867953
NCBI-ProteinID: XP_020312888
Ensembl: ENSOKIG00005006095
LinkDB
Position
LG23:21272387..21294406
AA seq 522 aa
MALPSLDSSLQGIPKNVLAVSMETKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTSSGP
KPCEACQQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCFNGGCSWTGCIKEYEAQHE
GKCEYEHVPCEACQVLILRSEKERHNERECEERTLNCKYCKVSFNFKQIKAHDEICQKFP
MQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKAVIDNGKHSDHEQTNVMEHMRL
ILATSMVRLQRPEAPGLGEWQEDSGIGLYRAPEEGATASAATVGGGTAASGQTSGLDHKV
TVLENIVCVLNREVERSSLTLEAFSRQHRLDQDKIENLSNKVRQLERTLTMRDLQLAETD
QTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLYLNGD
GTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTSFQRP
ISEMNIASGCPLFCPLAKLTGKSSYLRDDTIFIKAIVDLTGL
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggccctgccctctttagattcctccctccaagggatcccgaagaatgtgctggctgtt
tccatggaaactaagtaccaatgccagcagtgtcaccaggtcctgaggaagccggtccag
gctcagtgtggacatcgcttctgtgtccactgtttcaaactgctcaccagctctggaccc
aagccctgtgaagcctgtcaacaggaggagatatacgaggagccccagtccattctcaat
agcaatgaggcttttccagacaatgcagccggtagagaaatcgccagcctgcctgccaaa
tgtttcaatgggggctgctcttggacaggttgcatcaaagaatatgaggcacaacacgag
ggcaagtgcgagtatgagcacgtaccatgtgaagcctgccaggtcctcatcctgcgtagt
gaaaaagagaggcataacgagagagaatgtgaagaaagaacattgaactgcaagtactgc
aaagtctccttcaacttcaagcagatcaaggctcatgatgaaatctgccagaagtttccc
atgcagtgcaaggactgtggaaagaaaaagatcccacgagaaaagtttctagatcacagc
agatcctgtgccaagtctaagactgcatgtccattcagtgaggttggctgcaaggctgtg
attgataatggaaagcacagtgaccacgagcagacgaacgtcatggagcacatgcgtctg
attctggcgacgtctatggtgcggctgcagcgtccggaggccccggggctgggggagtgg
caggaggactctgggattggcctgtaccgcgctcctgaggagggagccacagcttctgca
gccacagttgggggcggaaccgctgcctctggacagaccagtggccttgaccataaggtg
acagtgctggagaatatagtgtgtgtactgaacagagaagtagagaggagctctctcact
ttagaggccttctcgcgacaacatcgactagaccaggacaagatagagaacctcagcaac
aaggtgcgtcaactagagcgtactctcaccatgcgggatctacagctagccgagacagac
cagaccctgagggagctccagttctgcacctttgacggtgtgtttgtttggaagatcgct
gacttctctcgccgccggcaggacgctgtggccgggcgaacacccgccatgttctcacca
gcgttctattccagtaaatatggctataagatgtgtctaagactgtatctgaatggggat
ggaacaggtcgagggacacacctttctcttttctttgtggtgatgaggggcaagtgtgac
gctctgctcaaatggcccttcagtcagaaagtgactctgatgctgctggatcagaataac
agggagcatattattgacgccttccgacctgatgtcagctccacctctttccagcggcca
atcagtgagatgaacatagccagtggctgcccactcttctgcccattggctaaactgaca
ggcaagagctcctaccttagggatgataccattttcatcaaggccattgtagacctcaca
ggcttgtag

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