Oncorhynchus kisutch (coho salmon): 109873120
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Entry
109873120 CDS
T09179
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04020
Calcium signaling pathway
oki04510
Focal adhesion
oki04518
Integrin signaling
oki04540
Gap junction
oki04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109873120
04020 Calcium signaling pathway
109873120
09133 Signaling molecules and interaction
04518 Integrin signaling
109873120
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109873120
04540 Gap junction
109873120
09142 Cell motility
04810 Regulation of actin cytoskeleton
109873120
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oki01001
]
109873120
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oki04090
]
109873120
Enzymes [BR:
oki01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
109873120
Protein kinases [BR:
oki01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
109873120
CD molecules [BR:
oki04090
]
Proteins
109873120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
C2-set_2
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
109873120
NCBI-ProteinID:
XP_020320255
Ensembl:
ENSOKIG00005038087
UniProt:
A0A8C7JF14
LinkDB
All DBs
Position
LG28:854434..883021
Genome browser
AA seq
1104 aa
AA seq
DB search
MWRGTLPRVLSIHTGTMELGLAKSLPLVAIFTVLLQFCPEGFSLELSPSEKEVILSTNSS
FTVVCSGWSKVSWKSPRDPSLEGVAVEDRGTTSVLVLHNVTWRHSGNYICEEPSTEEAKD
ISVFVPDPEEWFHPLQQAVVMKEGEEGTIPCVVTDPGINVTLYERASKARVEGTYHPSKG
FTAILKDSSYICRGAMNGEEKASQVYYVYSIVVPKSMNAFMTLSKTVLKRGEALMVNCTV
EEAEMVYFKWDFPRKETIEPLTDFLSEIRIRSFLNISTVTLEDSGHYICRVQDPFSGTSA
MDNLTVTVLERGFVDLEPSINTNVSALQYQSVALTVQIEAFPKPQVLWTRDNTTLTGETV
SIDTREVHETSYLSTLTLVRVRMEQRGLYTVQVANEDDVKEITFDLQVKSSPKIIDLSDQ
HIDQGHGVLCVTEGVPTPTVHWYSCESIGKCSNKTTAWKSLSADQENVSIQMNVSYIEAS
GVNQVRSLLTFQTIGGITSVRCEARNERGRRAWDIKLVSNSLFSQVAVLAAVLALVVIAV
IFLIILIALWRKKPRYEIRWKVIESVSSDGHKYTYMDPMHLPYDCVWEVPRDSLVLGHTL
GSGAFGRVVEATAYGLGHSQSTTKVAVKMLKSTARTSETQALISELKIMSHLGPHLNIVN
LLGACTKQGPIYLITEYCCYGDLVDYLHRNKHTFLQYYADKNRRDADMCRNSTESTVQIQ
GKSECDGGYMDMTKEDSLNYVPMQELSDNIKYADIEPSVNETPYHQDSNYQGQGQERADV
ALSISDSPILSYTDLVGFSYQVAKGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDVMNDSNYIAKGKTFLPLKWMAPESIFQNLYTTLSDVWSFGILLSEIFTLGGTPYPGIL
MNEQFYTALKRGYRMPKPAHATDEIYDIMCKCWDEKFKKRPLFSSLVNLTGNLLTDAYKK
KYTQVNEIFLKSDHHAAIRSKPIPAGNPAVSSDDHSSGDRTGQETGEIEETGTEAGPSQT
DYIIAIPDIHVAKEAEAGGEVLDTATQSTSSPPSTTDQADTASLDGPEVPLEEPVPTEEA
VLAPTQEDKLPQSPCVPEVEESFL
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaggaactctcccaagagtgttatcaattcacactggcactatggagttgggc
ttggcaaagtctctgcctttggtggccatctttacagtgctgctgcagttttgtccagag
ggcttcagtctggagctcagccccagtgagaaggaggtcatactgagcaccaactcctcc
ttcacggtggtctgttctggttggagcaaggtgtcctggaagtctccccgcgaccccagc
ctggagggagtggctgtggaggacaggggaaccaccagtgtgctggtcctccacaacgtc
acctggaggcactctgggaactatatctgtgaagagccctctacagaggaggccaaggac
atatcggtgtttgtaccagaccctgaggaatggtttcatcccctgcagcaagcagtagtg
atgaaggagggagaggaaggtaccattccctgcgtggtgactgaccctggcattaacgtg
accctgtacgagagggccagcaaggcccgtgtggagggaacataccaccccagtaaaggg
ttcaccgccatcctgaaagacagctcctacatctgccgaggtgccatgaacggagaggag
aaggcgtcccaggtgtattatgtctacagcattgtggtccccaaatccatgaacgccttc
atgacactctcaaagacggtgctgaaacgaggcgaggccttaatggttaattgtactgta
gaagaagcagagatggtttacttcaaatgggattttccccgtaaagagacaattgagcca
ctgacagactttctatcggagattagaatccgctccttcttgaacatctccactgttact
ctggaggactctggccattacatctgccgagtgcaggaccctttttccggaacgtcagcc
atggataatctcactgtcactgttctggaacggggctttgtggatttggaaccctccatc
aacaccaatgtttcagcgctgcagtatcagagcgttgcgctcacagtgcagatcgaagcg
tttcccaaacctcaggtgctctggaccagagacaacaccacccttactggggaaactgta
tccattgacaccagagaggtgcatgagaccagttacctcagtactctgaccttggtaagg
gtccggatggaacagagggggctctacactgtccaggtggccaatgaagacgacgtcaag
gagataacctttgatcttcaagtcaagtcttccccgaagataatagatttgtctgaccag
cacatagaccagggccacggagtgctctgtgtcacagagggggtccccacacccaccgtc
cactggtacagctgtgaaagcattggaaaatgcagtaataagaccacagcatggaagtct
ctgtcggctgaccaagagaacgtcagcatccagatgaacgtcagctacatcgaggcctca
ggggtcaaccaagtccgcagccttttgaccttccagaccatagggggtattacatcagta
cgctgtgaagcccgcaacgagagagggcgcagggcctgggacatcaaactggtctcgaac
tctctgttctcccaggtggctgtcttggctgcagtgttagccctggtggtcattgccgtc
atcttcctcatcatcctcatcgccctttggagaaagaagccccggtatgagatccgttgg
aaggtgatcgagtcagtgagctcagatggccataagtacacctacatggaccccatgcac
ctgccatatgactgtgtatgggaggttccccgggatagcctggtcctgggtcacactctg
ggttctggagcatttgggagggtggtggaggccacagcctatggccttggtcactctcag
tccaccaccaaagtggctgtgaagatgctcaagtccacagcaaggacaagtgagactcag
gctctgatatctgagctgaagataatgagccaccttgggccccatctaaacatcgtcaac
ctactgggggcttgtacgaaacaaggtcccatttacctcataactgagtactgttgctat
ggtgacctggttgactaccttcaccgcaacaagcataccttcctgcagtactacgcagac
aaaaaccgcagggatgctgatatgtgcaggaacagcacagagagtacagtccaaatccaa
ggaaaaagtgagtgcgatgggggttacatggacatgaccaaggaagattctttaaattat
gtcccaatgcaagagctgagtgacaacatcaagtatgcagacatcgagccctcagtcaat
gagacaccctaccatcaggacagcaactaccaaggacaaggccaagagagagcagacgtc
gcgttgtctatcagtgactccccaattctgagctacacagatctggtgggctttagctac
caagtggctaagggcatggacttcctggcatccaagaattgtgttcatcgtgacctggct
gccagaaatgttctcatctgcgagggaaagctggtgaagatctgtgactttggcctggct
cgtgatgtcatgaacgactccaactacatagccaaaggcaaaacattcctgccactgaag
tggatggctccagagagtatcttccagaacctctacacaaccttgagcgatgtttggtct
tttggcattctgctttcagagatctttactctaggaggaacgccctatcctggcattctc
atgaatgagcagttctacactgccttgaagagaggctacaggatgcctaaacctgctcat
gctacagacgagatctatgatatcatgtgcaagtgttgggatgagaaattcaagaagagg
ccactcttctcctctctggttaatttgacgggaaacctgctgacggatgcttacaaaaag
aaatacacccaggtgaatgagatctttctgaagagcgaccaccatgctgcaatcaggtcc
aaacctataccagcagggaacccggctgtgtcttcagatgaccactcctcaggtgatcga
acgggtcaggagacaggggagatagaggagactgggacggaggctggcccctcccagact
gactacataatcgccatcccagatatccatgtagccaaagaggcagaagcaggtggtgag
gtgctggacaccgccacacagagtacatcaagtcctccgagcacaaccgaccaggctgat
acagcctccctggatggaccagaagtacccctagaagaaccagtacccacagaggaagcg
gtgcttgcccccacgcaagaagacaagctcccccagtctccatgtgtccctgaagtggag
gagagtttcctgtag
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