KEGG   Oncorhynchus kisutch (coho salmon): 109874390
Entry
109874390         CDS       T09179                                 
Name
(RefSeq) TNF receptor-associated factor 2-like
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04010  MAPK signaling pathway
oki04137  Mitophagy - animal
oki04141  Protein processing in endoplasmic reticulum
oki04210  Apoptosis
oki04217  Necroptosis
oki04621  NOD-like receptor signaling pathway
oki04622  RIG-I-like receptor signaling pathway
oki04920  Adipocytokine signaling pathway
oki05132  Salmonella infection
oki05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109874390
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    109874390
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    109874390
  09143 Cell growth and death
   04210 Apoptosis
    109874390
   04217 Necroptosis
    109874390
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    109874390
   04622 RIG-I-like receptor signaling pathway
    109874390
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    109874390
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109874390
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    109874390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109874390
   04121 Ubiquitin system [BR:oki04121]
    109874390
Enzymes [BR:oki01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109874390
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     109874390
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    109874390
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-RING_4 zf-C3HC4_2 zf-RING_6
Other DBs
NCBI-GeneID: 109874390
NCBI-ProteinID: XP_031665262
Ensembl: ENSOKIG00005025565
LinkDB
Position
LG29:complement(18697843..18724954)
AA seq 526 aa
MARISLPSLDSSLPGIPQSVLAVSMEAKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTS
SGPKPCEACRQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCISEGCSWTGCIKEYEA
QHEGKCEYERVPCETCQVLILRSEKERHNERECEARTLNCKYCKVSFNFKEIKAHDEICQ
KFPMQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKVVIDNGKHSDHEQTSVMEH
MRLILAMMSLVRLQRPEAPGLGEWQEDSGLGLYRAPEDGATATAATDGGGAAASGQTFGL
DHKVRALENIVCVLNREVERSSLTLEAFSRQHRLDQDKIENLGNKVRQLERTLTMRDLQL
AETDQTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLY
LNGDGTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTS
FQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL
NT seq 1581 nt   +upstreamnt  +downstreamnt
atggcccgcatatctctaccctctttggactcctcccttccagggataccccagagtgtc
ctggctgtttccatggaagctaagtaccaatgtcagcagtgtcaccaggtcctgaggaag
ccagtccaggctcagtgtggacatcgtttctgtgtccattgtttcaaactgctcaccagc
tccggcccaaagccctgtgaagcctgtcgacaggaggagatatatgaggagccacagtcc
attctcaatagtaatgaggcttttccagacaatgcagctggtagagaaatcgctagcctg
cctgccaaatgtatcagtgagggatgctcttggactggttgcataaaagaatatgaggca
caacacgagggcaagtgtgagtatgagcgagtaccatgtgaaacctgccaggtccttatc
ctgcgcagtgaaaaagagaggcataatgagagagaatgtgaagcaaggacattgaactgc
aagtactgcaaagtctccttcaacttcaaggaaatcaaggctcatgatgaaatctgccag
aagtttcccatgcagtgcaaggactgtggaaagaaaaagatcccacgagaaaagtttcta
gatcacagcagatcctgtgccaagtctaagactgcatgtccgttcagtgaggtcggctgc
aaggttgtgattgataatgggaagcacagtgaccacgagcagactagtgtcatggagcac
atgcgtctgatcctggcgatgatgtctctggtgcggcttcagcgtccagaggccccaggg
ctgggggagtggcaggaggactctgggctgggcctgtaccgcgctcccgaagatggagcc
acagctactgcagccacagatgggggaggagccgctgcctctggacagacctttggtctt
gaccacaaggtgagagcactggagaatatagtgtgtgtattgaacagggaagtagagagg
agttctctcactttagaggccttctcacggcaacatcgtctagaccaagacaagattgag
aacctcggcaacaaggtacgtcaactagagcgtactctcaccatgcgggacctacaactg
gctgagacagaccagactctgagagaactccagttttgcacctttgatggtgtctttgtc
tggaagatcgccgacttctcacggcgccgccaggatgctgtggctgggcgaacacccgct
atgttctcaccagcattctactcaagtaaatatggctataagatgtgtctgagactgtat
ctgaatggggacggaacgggtcgagggactcacctttctcttttcttcgtggtgatgagg
ggcaagtgtgacgctctgctcaaatggcccttcagtcagaaggtgacactgatgctgctg
gatcagaataacagggagcatatcattgatgccttccggcctgatgtaagctccacctct
ttccagcggccaatcagtgagatgaacatagccagtggctgcccactcttctgcccattg
gctaaactggcaggcaagagctcctaccttagggatgacaccattttcatcaaggccatt
gtagacctcacaggcctgtag

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