Oncorhynchus kisutch (coho salmon): 109876862
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Entry
109876862 CDS
T09179
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03440
Homologous recombination
oki03460
Fanconi anemia pathway
oki04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109876862 (brca1)
09124 Replication and repair
03440 Homologous recombination
109876862 (brca1)
03460 Fanconi anemia pathway
109876862 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oki01009
]
109876862 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109876862 (brca1)
03036 Chromosome and associated proteins [BR:
oki03036
]
109876862 (brca1)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109876862 (brca1)
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109876862 (brca1)
Protein phosphatases and associated proteins [BR:
oki01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
109876862 (brca1)
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109876862 (brca1)
Multi subunit type E3
BRCC complex
109876862 (brca1)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
109876862 (brca1)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
109876862 (brca1)
BRCA1-A complex
109876862 (brca1)
BRCA1-B complex
109876862 (brca1)
BRCA1-C complex
109876862 (brca1)
BRCA complex
109876862 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
109876862 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
zf-RING_5
PTCB-BRCT
zf-ANAPC11
RTT107_BRCT_5
zf-MIZ
zf-RING_4
U-box
zf-rbx1
TRAF3_RING
YicC-like_C
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
109876862
NCBI-ProteinID:
XP_020324812
Ensembl:
ENSOKIG00005008075
UniProt:
A0A8C7DBH0
LinkDB
All DBs
Position
LG20:complement(24459068..24507505)
Genome browser
AA seq
1554 aa
AA seq
DB search
MNTMMSPKAEDVRQGISVICEILQCPICLELMSTPVSTKCDHQFCKFCIMKLLDSSRRKE
ANCPVCKTKITKRSLQESPGFQKLAEGLQNMVQAYEHDTCTNYFTGMSQVRRHMSVTETV
QKKNGHDVSSDDVWASDRADDEDHEFSMPCSSTIAAKDGFATLMGLEDSCPVISDEGFDS
SLGDIPPATEKHTDDSKATSTTEKQKPALEAEIPEVVERAPSRPQRLGKKISTHPQDPPC
CPEKVRNQPVRRSTRNNKRESLTEMIDQNQKKSLEKVSEWLMNNSSTEVNSEKEKNTEGS
YDSVSLAGSCSPSSPLADNLRNKDQSPKREERGKCLEELVFGAVYKRDRRGNRSFSPQNI
AITDPPPPCPAEELQILKKIAKRRMRNKLTPADFVKRPRSEENEDSVMDDQPEMTETQED
YPNEHPKDTEENKLIVLTGELNSNSSDKQGEELDELPEGDNKENEDVEDSPVFDVPLREP
GRKSNKKMHGRWQDVDRDLQGNVKSENNEQKKPAKKKGENIKVEKSKATKSLVLVGVREG
GSDSKMPKSRPSGQTEVQIESYPSSEDPGSPIMRRTRRSRRLQLFTEEVQGSNKIGTATS
TKVVVLDSDCNEMQQSKEAKADTDKDNVACLQNQNTEKAVRKNGCVLDEEMGGIESLDSS
EKILCEMIESQKVNQVEESIVEVPSTGRPCHADVACSVTMVPSSISTPEASVSCAVPESV
NQSNPVIKPLDDLRSNVPQETSASQAKCIDLDEDVRNDSELDTEQLLKSFKATKRKSFHL
GSPNIKRSSFWSNKEITTLTKTEENKHVGTDMEAGNGQGFSRTTECPTVQQESEKGTIFE
NSCCSDLSPPSSSLNNISQEKAQRNRKRLRKSILTRPPQDLVDSSNPDTSGKTQKQILSR
LSGNSSKSALSPNKVTKSQMESPHQAVGSGLLFPAFGASKEDLPDPTPVASKQLRVPKSQ
QPYKVEGSMSKSPTELESSHSVGSEMAVELNKTCPENMTGNIANTESSLTPDGLLPIIQS
VVIQEAQRTKRCGVVSLHSPIKSTLKRRKAQRLESSSESNCSGEEEELPSLAQIFRPSTC
PPTAEEEEEESVTLLKDHARGQGSYREAGDAAEDGQRASSPPMCPSPEWVTTSQASVDLF
GTPEEAEGMAGDTGLTQESSQFSSECIATQQKVAMQEELRRLERMMALVSEALQEKEEEE
PTGAKALLQPDRSTVSSGLDLQANLPCGQGTRKRSASREGAQNIGGNAASPPPGLGDSEG
LGPTPTTPCRTKHEGPGGTGAGRLGRQSGRSLRSSMRARPNQVSPVVRVHSGTNAPSAGL
EVQDTPVVIQHANTHPSTHTALREPAGVKLVLVASGLSAPEQSMVKKFAKRMGGSVCSQV
TSETTHVIMNTDGDLVCERTLKYFLGIAGRKWVVSFQWISECFKQGTVLNETSFEVRGDV
VNGHDHQGPMRARTTGDTSLLMKDYEICFQGPFTDMTTGQMEWMVELCGATVVQEPLLFT
GELKTRQLIVVQPGLDQSPINYQALQRIATVITRGWLFDSVATYTLQSLDNYRT
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatgatgtccccgaaggctgaagatgtcagacaggggatctctgtcatctgt
gagatcttgcagtgtccaatatgtttggaattgatgagcacacctgtgtctactaagtgt
gaccaccagttttgcaagttttgtataatgaagcttttggacagcagtaggagaaaggag
gccaactgtccagtttgtaagacaaagatcacaaaaaggagtttgcaggagagccctggg
ttccagaaattggcagagggattgcagaatatggtccaggcctatgaacatgacacctgc
acaaactacttcactggaatgtcccaggtgaggagacatatgagtgtcacagagactgtg
cagaagaaaaacggccatgatgtctcatctgatgacgtatgggctagtgaccgtgctgat
gacgaggatcatgagttttcaatgccctgctcgtcaactatagcagccaaggatggcttt
gcaacgctcatgggtcttgaagattcttgtcctgtcatttcggacgaggggtttgacagc
agcctaggtgacatacctccagccactgaaaagcataccgatgactctaaagctacctcc
accacagaaaaacagaagccagcattagaggcagaaatacctgaggttgttgaaagagct
ccctcacgacctcaaaggcttggaaaaaagataagcactcatcctcaagatccaccatgc
tgtcctgaaaaggtcagaaaccaacctgtcagacgatccacgaggaataacaaaagagag
tccttgaccgaaatgattgaccagaatcagaagaaaagtctagagaaagtctctgagtgg
ctcatgaataattcctcaacagaagtaaactctgagaaggagaaaaacacagagggctct
tatgactcagtttctttggcaggaagttgttccccctcctcacccttagcggataacctc
agaaataaggaccagagtccaaagagagaagagcgtggcaaatgtcttgaggagctggta
tttggggctgtttacaaacgggatcgaagagggaaccgcagtttttcaccacagaatata
gcgatcacagaccctccaccaccctgtccagctgaggaactccagatcctgaagaagatt
gccaaaaggaggatgagaaataaactgacacctgctgactttgtcaagagaccaagatct
gaggagaatgaagacagtgttatggatgaccaaccagagatgacagaaacacaagaggat
tatcccaatgaacacccaaaagatactgaagaaaataagttgattgtcctgactggggag
ctgaattctaatagctctgacaagcaaggagaagagcttgatgagttgccggaaggtgac
aacaaagagaatgaagatgtagaggacagtcctgtgtttgatgtgccactacgggaacct
gggaggaagtcaaataaaaagatgcacggtaggtggcaggacgttgacagggatttacaa
gggaatgtaaagtcggagaataacgagcaaaaaaagcctgccaagaaaaaaggggaaaac
atcaaggtggagaagagcaaggcaaccaaatccttagtccttgtgggtgtcagagagggt
ggaagtgactctaagatgcctaagagcagaccatcaggccagaccgaggttcagattgag
agttaccctagcagtgaggatccaggaagcccaatcatgaggagaaccaggaggagtcgg
aggcttcagcttttcacagaggaagtacaagggagtaacaagatcggcactgcaacatcc
acaaaggttgtcgttcttgattcagactgcaacgagatgcagcaatcaaaggaggcgaaa
gctgacaccgacaaggataatgtggcgtgtttgcagaaccaaaatacagaaaaggctgtc
aggaaaaacggatgtgttttggatgaagaaatgggaggtattgagagcttggactctagc
gagaaaatattgtgtgaaatgattgagtcacagaaagtaaaccaagttgaggagtctatt
gtcgaagtcccaagtacaggaaggccttgtcacgctgatgttgcttgttcagtgactatg
gtaccaagttcaattagtacccctgaggcaagtgtctcgtgtgccgtgcctgagagtgta
aaccaaagtaatccggttatcaaaccattagatgacttgagatcaaatgtaccacaagag
acgtcagccagccaggccaaatgcattgatctagatgaggatgtccggaatgacagtgag
ctggacactgagcaactgctgaagagcttcaaagccaccaaaaggaagtccttccacctt
ggtagtccaaatatcaagaggagttccttctggtccaacaaggagattacaactcttaca
aagactgaagagaacaaacatgttggcacagatatggaagcaggaaatgggcagggattt
tcaaggacaacggagtgtcccacagtccaacaggaatctgagaaagggacaatattcgaa
aattcttgctgtagtgatttgagcccaccttcaagttccctcaacaatatttcacaagaa
aaggcgcagaggaatcgtaaaaggctcagaaaatccattcttaccagaccacctcaggat
ttagtggattcttcgaaccctgataccagtgggaagacccagaaacagattctgtccagg
ctttctggcaacagctcaaaaagtgccctcagtcccaacaaagtcacaaaaagccaaatg
gaatctccccaccaagctgtgggttctggtctgctctttccagcttttggcgcctctaag
gaagatctaccagatccgacacctgtagcttcaaagcaacttagagtccctaaaagtcag
cagccatacaaagtggagggcagcatgagtaaaagtccaacagaactggagagtagccac
agtgttggatcagagatggcagtggagttaaacaaaacgtgtccagagaacatgactgga
aacatagccaatacagagtcctccttgactccagatggcctccttccaattatccaatca
gtagttatccaagaggcacagaggactaaaagatgtggtgtggtcagcttgcactctccc
atcaagagcaccctaaagcggaggaaggctcagagactggagtcttcctctgagtccaac
tgtagtggggaggaagaggaactgccttcccttgcacaaattttcagaccgtcgacttgt
ccaccaaccgctgaggaggaggaggaggaatcagtcacattgctcaaagaccatgccagg
ggacaaggaagctacagggaggctggtgatgcagctgaagatgggcagcgagcgagcagt
cctcccatgtgccccagtcccgaatgggtcaccaccagccaggcatctgtggatctgttt
ggaacaccagaagaagctgaaggaatggcaggtgacactggcctgacacaggaatcatca
caattttcaagcgagtgtattgccactcagcaaaaggttgcgatgcaggaggagctgcgg
aggctggagagaatgatggcgttggtgtctgaagcgctccaggagaaggaggaggaggag
cccactggggccaaagcgctgcttcaaccagacaggtccacagtctcctcaggccttgat
ctccaggcgaacctgccgtgtggccagggcaccaggaagagatctgccagcagggaaggt
gcccaaaacattgggggaaatgcagcctcacctccccctggtcttggagacagtgagggc
cttgggcccacccccaccacgccctgccgcaccaaacatgagggacctggagggactgga
gcagggcggcttggcagacagtcaggacggagcctaaggagcagcatgagagcgaggccc
aaccaggtgtcgccagtggtcagagtgcacagcgggaccaatgctccctcagctgggctg
gaggtccaggataccccggtggtcatccagcatgcaaacacacacccatcaacacacact
gcactgcgggaacctgctggggtaaagttggtgctggtagcatcaggactcagtgcacct
gaacagtcgatggtgaaaaagtttgccaagaggatgggaggcagtgtgtgttcacaagtg
acgtccgagaccacccatgtcatcatgaacacagatggtgatctggtgtgtgagcgcacg
ctcaagtacttcctgggcatcgcaggcaggaagtgggtggtgagcttccagtggatttcc
gagtgtttcaaacaagggacagtcttaaatgagacgtcatttgaggtgcgaggagacgtt
gtgaacggacatgatcaccaagggcccatgagagcacggaccacaggggacacaagtctg
ctgatgaaggattacgagatctgtttccaaggccctttcaccgatatgaccactggtcag
atggagtggatggtggagctttgcggtgcaacagtggttcaagagcctcttctcttcact
ggtgaactgaaaactcgtcagctcatagtggtacaaccaggcttggaccaatcaccaata
aactaccaagccctccagaggatagccacggtcatcacccgtggttggctatttgattcc
gtggcaacctacacccttcaaagccttgacaactacagaacgtaa
DBGET
integrated database retrieval system
