Oncorhynchus kisutch (coho salmon): 109878550
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Entry
109878550 CDS
T09179
Name
(RefSeq) apoptotic protease-activating factor 1-like isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04115
p53 signaling pathway
oki04210
Apoptosis
oki05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
109878550
04115 p53 signaling pathway
109878550
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109878550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
APAF1_C
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
WHD_APAF1
Beta-prop_CAF1B_HIR1
WD40_Gbeta
NB-ARC
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
CARD
NBCH_WD40
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_Aladin
CFAP251_N
DSE1_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_VPS8
ASA1
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
eIF2A
PEP5_VPS11_N
Ge1_WD40
Beta-prop_Nup120_160
WD40_like
CARD_2
Beta-prop_WDR75_2nd
WD40_RFWD3
PAC11
AAA_16
NACHT
AAA_22
Motif
Other DBs
NCBI-GeneID:
109878550
NCBI-ProteinID:
XP_031687315
Ensembl:
ENSOKIG00005038271
LinkDB
All DBs
Position
LG9:1997787..2053747
Genome browser
AA seq
1305 aa
AA seq
DB search
MAMMEEGARSCLLQSRSSLEQDIRASYLMDHMISDGVLTGDEEDRIRSKPTRREQAVALL
ELLLRKDNQAYISFYNALVRESYGDLASLLHNSLPLVSPEAEKSFSDGGTRYVQAVLSEG
GVPQRPVVFVSRPALMNRVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRDHALITEC
FPGGVHWLSIGQLDRSDLLVRIQSLCFRLEQQSQEKDPSSSLHRPPGSLEEAKERLRFLM
LRRYPRSLLILDDIWDSSVLKAFDIQCRVLLTTRDRSLADCVSGPKSEVAVESGLEEGQA
LEILALYVNRKPQRLPEQARSIVRECKGSPLVVSLIGALLREFPDRWAYYLHTLQQKKFK
RIRKSSSYDYDALDQAMAASIQVLSEEHRELYIDLTVLEKDVKVPAKVLSVLWDLEPEEV
EDVLQDFVNKSLLFRDCHHRPYLYYLHDLQLDFLAEMNRSGLESLHTKVVRQYQQRYSKG
PPTSGDEECLYWFRFLTYHMAKANLTQELYSLMFSLDWVRTKAQIMGPAHLINDYLEYST
ILDKENSEVRGHFQEFLSLNGHQLEQRPFPDVVQLALSQPDSSEVYRQALLQAQERATRG
GLYLDWVNKSSLKSLSRLVVQPHQGSIYSACFSHDGTKIASCGSSKTLRVFKSTSGEKLL
EIQAHDDEVLCCAFSLDDHLLATCSSDRKVKVWNVERGTLMRMFEDEHEEQVNHCQFTNT
RRRLLLATCSNDKFMNTKLWNINKPSSQNTMFGHLEPVNHCCFSPDDAYLSTSSSDGTLK
LWEVSSANEWKSIDVADMFPEQREQTEVMVKCSTWSAGGRTIICAARNAVFVFDVETAAM
LLEIRTSRLSTVQYCHACPSSNLVAIALSHYAVELWDIETSKKMADCSGHLSWVHGVQFS
PDGSLLLSCSDDQTVRVWETNKVHTSSAVCLKRDSDVLFNNGDITVVAADNRNRLQVRNG
RTGAVMFQSENQESRIRCTAICSQTSAVGLGREDGTIQAGGKTVREVLRTIGWRTLQRLT
PHRGLLLALGLETGSVQVLEVPSGTSLATLQGHTRTVLHCQFTPEGHTLITSSEDTTIRV
WRWRTGECVVLEGHKEQVRCFSLLTTTPSSETHLLSWSFDGTIKVWDMSSGERLQDLVCH
QGAVLACDVSPDGQLFATTSADKTAKVWSSASWECVRLLNGHQDCVRSCRFSWDGRRLAT
GDDNGEIRLWNVKDGTLLKICSRDNKDAMDSLHGGWVTDLHFSPDNTVLLSTGGYIKWWN
VEKGEALQTFYPTGANLKRIHVSPDFSTFVTIDNIGILYILKKVE
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgatggaggaaggggcgcggagctgcctgcttcagtcacgctccagcctggag
caggacatcagggcttcctacctgatggatcacatgatcagtgatggtgtgctgacgggg
gacgaggaggacaggatcaggagcaagcccaccaggagagagcaggcggtggccctgctg
gagctgctcctgaggaaggataaccaggcctacatctccttctacaatgccctggtccgc
gagagctacggagacctggccagcctgctccacaacagcctgcccctggtctcccctgag
gctgagaagagcttctcagacggtggcacccgctatgtccaggcggtgctgagtgagggc
ggtgtgccccagagacccgtggtgtttgtgagccggccagccctgatgaaccgggtcagg
gagaagctctaccgcttgcagaaggagcccggctgggtcactgtgttcggcatggccggc
tccggcaagtctgtcttggctgcggaggcagtccgagaccacgcactcatcacagagtgt
tttccaggaggagtccactggctgtccataggccagctggaccggtctgacctgctggtt
aggatccagtcactgtgtttccgcctggagcagcagagccaggagaaagacccctcgtcc
tccctccacaggcctcctggctctctggaagaggccaaggagcgactacgcttcctcatg
ctccgtcgttaccccaggtcgttgctgatactggatgacatctgggacagctcggtgctc
aaggcctttgacatacagtgtcgagtactgctcaccacccgagacagaagcctagccgac
tgtgtcagcggtcctaagtctgaggtggcagtggagagtggtctggaggagggtcaggcc
ttggagatccttgccctgtatgtcaacaggaaaccccagagactcccagaacaggcccgc
agcattgtccgagagtgcaaaggctctcccttggtggtgtcgctaatcggggccctgctg
cgggagttcccggaccgctgggcctactacctgcacacgctccagcagaagaagttcaag
cgtatccgtaagtcgtcttcgtatgactacgatgcccttgaccaggccatggctgccagc
atccaggtcctgtctgaggaacacagggagctgtacattgacctcaccgtgctggagaag
gacgtcaaagtacctgccaaggttctgtcagttctgtgggatctagaaccggaggaggtg
gaggacgttctccaggactttgtgaacaagtccctactgttccgtgattgtcaccaccgg
ccctacctctactacctccacgacctccagctggacttcctggctgagatgaaccgctct
ggcctagagagcctccacaccaaggtggtgcgtcagtaccagcagcgctacagcaagggt
ccccccacctcaggagatgaagagtgcctctactggttcagattcctcacctaccacatg
gccaaggccaacctcacacaggagttgtactctctgatgttctctctggactgggtcaga
actaaagctcagattatgggaccggctcatctcatcaatgactatttggagtacagcacc
atactggacaaagagaacagcgaggtgcggggccacttccaggagttcctgtctctgaac
ggccaccagttggagcagcgtccattccctgacgtagtgcagctggccctgtcccagcca
gactcctctgaggtgtaccgccaggccctgctgcaggcgcaggagagggccaccagaggg
ggactctaccttgactgggtgaacaaaagtagtctgaagagcctgtctcgtctggtggtc
cagccccaccagggatccatctactctgcctgcttctcccacgacggtaccaagatcgct
tcctgtggctccagcaagacactgcgagtgtttaagagcacgtctggggagaagctgctg
gagatccaggcccacgacgatgaggtgctctgctgcgccttctccctggatgaccatctc
ctagcaacctgctccagtgataggaaggtcaaggtttggaatgtggagcgtgggactctg
atgaggatgtttgaggacgaacacgaggagcaggtcaaccactgtcagttcaccaacaca
cgccgacgcctcctactggccacctgttccaacgacaagttcatgaacaccaagctgtgg
aacatcaataaaccctcttcccagaacaccatgtttggtcatttggagcctgtcaatcac
tgctgtttctcccctgatgacgcctacctctccacctcttccagcgacggaaccctgaag
ctgtgggaggtgtcctcggctaatgagtggaagtccatagacgtggcggacatgttcccg
gagcagagagagcagacggaggtcatggtgaagtgcagcacctggtcagcaggcggcagg
accatcatctgtgctgccaggaacgcagtctttgtgtttgatgtagagacggcggccatg
ttgttggagatccggaccagtcgtctgagcacggtgcagtactgtcacgcctgtcccagc
agcaacctggtggccatcgcactgtcacactatgctgtggagctgtgggacatagagacc
agtaagaagatggctgactgtagtggtcatctgagctgggtccacggagtccagttctcc
cctgacggatctctactgctctcctgttctgacgaccagaccgtcagggtgtgggagact
aataaagtccacacctcctcggctgtctgtctgaagagggactctgacgtgctctttaac
aacggtgacattactgtggtcgccgctgacaaccgcaacagactgcaggtgaggaatggg
aggaccggagcggtgatgttccagtcagagaaccaggagtctcgtatccgctgcactgcg
atctgctcacagacctcagctgtggggctgggacgagaggatgggacgatacaggcagga
gggaagacagttagggaggtactgaggaccattggatggaggactctacagcggctgacc
cctcacaggggcttgttgctggcgctagggctagaaacaggcagtgtgcaggtgttggag
gtgccgtcggggacctctctagccactcttcagggtcacaccaggacagttctccactgc
cagttcaccccggagggacacacactcatcacctcctctgaggacaccaccatacgggtg
tggaggtggaggacaggtgagtgtgtggttctggagggccacaaggagcaggtcagatgc
ttctctctgctcaccaccacaccctcctcagagacacatctcctcagctggtcctttgac
ggcaccatcaaggtgtgggacatgtctagtggtgaacggctgcaggatctagtgtgtcac
cagggggcggtgctagcctgtgacgtgtcgcctgacggacagctcttcgccaccacctcc
gctgacaagactgccaaggtgtggagcagtgcatcatgggagtgcgtgcgcctgttgaac
ggccaccaggactgtgtccgcagctgccgcttctcttgggacggccggcgcctagcaacc
ggcgacgacaacggagagatacggctgtggaacgtgaaggatggtactctgcttaagatc
tgttcccgtgacaacaaggacgccatggactctctgcacggaggctgggtgaccgacctg
cacttctccccagacaacactgtgctgctgtctacaggaggatacattaagtggtggaac
gtggagaaaggagaggccctccagaccttctacccgacaggagccaatctgaaaaggatc
cacgtgtcacctgacttctccaccttcgtcaccatcgacaatatcggaatcctctacatc
cttaagaaggtggaatga
DBGET
integrated database retrieval system
