Oncorhynchus kisutch (coho salmon): 109879094
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Entry
109879094 CDS
T09179
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109879094 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
109879094 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109879094 (lsm3)
03041 Spliceosome [BR:
oki03041
]
109879094 (lsm3)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109879094 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
109879094 (lsm3)
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109879094 (lsm3)
Complex C
U2 snRNP components
109879094 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
YfkB
vATP-synt_E
Peptidase_M16_M
DUF150_C
Motif
Other DBs
NCBI-GeneID:
109879094
NCBI-ProteinID:
XP_020326867
Ensembl:
ENSOKIG00005004219
LinkDB
All DBs
Position
LG5:68872711..68875637
Genome browser
AA seq
102 aa
AA seq
DB search
MADEVEQQTTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEET
VTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagttgaacagcaaacgaccaccaacacagtggaggagcccctggatctg
atcaggctcagtttggatgaaaggatatatgttaagatgagaaacgaccgagaactcagg
ggcagattgaacgcctacgatcagcacttgaacatgatcttgggagatgttgaggagacg
gtgacaacagtagagattgatgaggagacgtatgaagaaatttacaagtcaacgaagagg
aacatccccatgttgtttgtgagaggtgacggagtcgtcttggtcgctcctcctctcagg
gtgggctag
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